Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01401 ATGGTCAGTCTGTTGTTGGGGCCGTCATGTGTAAGCTTCATCGTTGATTCTTCGGTTGGTGATCCTCCTGATTCTCTTTCCGCTCAATTATTATTCGGTTTGACAGCATGGATTTGGTACCCAGCGTTAAGGATTCCTTTGGAACTAACTGATTGTGCATGTGGTTGCAAATTCACTTGCTACCAAATCGTTGATGTAGACAACTATTATGATTTTTTTGGTGATCAGAGAATACATCTGCAAACTGTTGTGCTGTATTTGTTTTGTGAAAAATTAAACTATTTTCGTATTAAAGAGCTCAAAGATGTGCTCACGCAGTTGCACCTTTCAAAGCAGGGAAAAAAGCAGGATCTTGTTGATCGAATATTATCTGTTCTCTCAGATGAACAAGTTTTAAATCACACCAATAGTGCTCTGATCACGGGAAGTGGAACAAAATGGTATCCTCCTGACACTCCACAACAAGCTGTTTTTGATGGTAGCCATGTGTTTATAGTCATTTTTGCAATAGAAGTTGAGGCATCAAAATTTTATAGTTTTCTGGTTGAGCAGACCATAACTTTGCCACCATCAAAGTGGGAATCTCTGGCAGAAGGTTCTAGAACTAACATCCGAATTTCCATGAGAGATACGTCAGCCCCAGAAAAAAACAAAGAAAAGAAAAAAGAGCTCTTGATGCCACTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAGGAACAGGTGGCAAAATTAGTTGATGATACATATAGGTCTGGTTTAAGATGGAAAATGCAGATATCTGGGGCCACTGATCTTGCATCTAAGGGACAGGGTGTATCAGATAGCAGTAGTGTAAAGGTGAAAGGTGAAATTGATGAATCCTTTCAACCAGATACAAATATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGCGTTATCATTCCAGAGAAACCTACTGAAGGCATCCCGCCAGTTCCTAATAAATTTTACTGTGAACTATGTCGTCTCACTCGCGCTGACCCATTTTGGGTTGCAATGGCGCACCCTTTGCTTCCCGTTAAGTTAACCACAACTAGTAATCCAACTGATGGAGCCAACCCTGTGCAGAGTGTGGAGAGATCATTTCAACTTACTAGGGCTGACAAGGACATGGTATCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTGCTGAACGACAAGGTTCCATTCAGAATGCAATGGCCGCAATATACAGACTTGCAGGTCAATGGTGTTCCTGTTCGTGCAACTAACAGACCTGGTTCACAGTTGCTTGGAGCTAATGGGCGGGATGATGGCCCAATTATCACGCCATACACAAAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAGAAAGCGCAGCATGCAGCAGATCCTAAACCTAATTCCAAAGGAGTCTGATGGTGAGCTATTTGAAGACGCTCTTGCACGTGTCTGCCGTTGTGTTGGTGGCGGAAATGGTGATGATGATGCTGATAGTGACAGTGATTTGGAAGTAGTTTCAGATACTTTTAGTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCCTGTATTCATATGGGTTGCTTTGATCTTGATGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTAGAGAATATCATCATTGACCCTTACTTCAATCGCATCACTTCTATGATGTTGAATTGTGGTGAAGAAATTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGTCAGGAATTAGGGATTCTAGCACAGTGGCATCATCCTGATGGATCACCATGCGTTTCAACTGATGGAGATTTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTGTTTCAGACAGTCATACTGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGTACAAACACCTCTTCTGGTAATAAAATGAAAGGTGTTTTTGGAAATCCCGAACAGGTTGTTATTCCGATGAGCAGCAGTGCCACTGGAAGTGGCCGGGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGCATATTGACTATTCCACTGCAAATGGGATAGAGATGGATTCTCTGTGTCTCAATACTGTTGATTTAGCATATGAATATCCTGCACATGACACTTCTGCTCAGGTGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTTTTGGTATCTCCTGCAATTGCGTATAAGAACAACCAAAATGATGCTACTGATGGTTATTCCATACAACCACCTGTAATAGTTAATTCATATACTGATGATCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCCAATGATGAGGATTTTGGGATGTCTTCCCTGTGGTCATTGCCTTCTGGAAGTCAGTCTGGTCCTGGATTCCAATTATTTGGCTCAGATGCAGATGTGTCAGATGCATTGGTTCATCTGCAACATGGTCCTGTGAATTGCTCCTCATCACTAAATGGTTATACACTGGCACCTGATCACGCCTTGGGATCTGGTGGTATCTTGCAAGATTCCCCTGCTGGACGGTTGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTAGCATTTGGTGGTGATGATCCCTCACTTCAGATTTTTCTTCCCACAAGACCAGCTGATTCATCCATGCAGAATGAATTGAGAGATCAGGCAAATCTGGCTAATGGTGTTTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAGCAATGTTGATGCTTCTACTCAAAATGGATTGAATTCTAGACGTCAAATGCCAACCAGAGAAGGTGGCACAAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGACCTGACAGGCCAAGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGACGTTCTGTAAGACCCCGCTTGTACCTTTCTATTGATTCGGATTCAGAGTAA 3189 0.4224 MVSLLLGPSCVSFIVDSSVGDPPDSLSAQLLFGLTAWIWYPALRIPLELTDCACGCKFTCYQIVDVDNYYDFFGDQRIHLQTVVLYLFCEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVLNHTNSALITGSGTKWYPPDTPQQAVFDGSHVFIVIFAIEVEASKFYSFLVEQTITLPPSKWESLAEGSRTNIRISMRDTSAPEKNKEKKKELLMPLSKMWAKKNAGGKEQVAKLVDDTYRSGLRWKMQISGATDLASKGQGVSDSSSVKVKGEIDESFQPDTNIRCLCGSRLETEDLVKCDDPRCHVWQHISCVIIPEKPTEGIPPVPNKFYCELCRLTRADPFWVAMAHPLLPVKLTTTSNPTDGANPVQSVERSFQLTRADKDMVSKPEFDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRKRSMQQILNLIPKESDGELFEDALARVCRCVGGGNGDDDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLDVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMLNCGEEITEVEVKPDGSWRVKAKSESERQELGILAQWHHPDGSPCVSTDGDFKRVDTLKQVKQEGVSDSHTGLKLGIRKNRNGVWEVSKPEGTNTSSGNKMKGVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGIEMDSLCLNTVDLAYEYPAHDTSAQVGGAEVIVLSDSEEDNDLLVSPAIAYKNNQNDATDGYSIQPPVIVNSYTDDHNLGGNSCLGLFPNDEDFGMSSLWSLPSGSQSGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYTLAPDHALGSGGILQDSPAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANLANGVCTEEDWISLSLGGGAGGSNVDASTQNGLNSRRQMPTREGGTNTLDDTASLLLGMNDVRPDRPSRQRSDSPFSFPRQRRSVRPRLYLSIDSDSE 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01401 1062 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 91 844 - -
Spst11g01401 1062 CDD SP-RING_Siz-like 543 592 IPR031141 -
Spst11g01401 1062 Pfam MIZ/SP-RING zinc finger 542 590 IPR004181 GO:0008270
Spst11g01401 1062 MobiDBLite consensus disorder prediction 982 1062 - -
Spst11g01401 1062 Pfam PHD-finger 297 349 IPR019787 -
Spst11g01401 1062 CDD PHD_Bye1p_SIZ1_like 297 348 - -
Spst11g01401 1062 FunFam E3 SUMO-protein ligase SIZ2 516 630 - -
Spst11g01401 1062 Gene3D SAP domain 88 137 IPR036361 -
Spst11g01401 1062 MobiDBLite consensus disorder prediction 986 1018 - -
Spst11g01401 1062 SUPERFAMILY SAP domain 90 132 IPR036361 -
Spst11g01401 1062 SUPERFAMILY FYVE/PHD zinc finger 290 352 IPR011011 -
Spst11g01401 1062 ProSitePatterns Zinc finger PHD-type signature. 298 348 IPR019786 -
Spst11g01401 1062 Pfam SAP domain 93 123 IPR003034 -
Spst11g01401 1062 ProSiteProfiles Zinc finger SP-RING-type profile. 529 612 IPR004181 GO:0008270
Spst11g01401 1062 SMART sap_9 92 126 IPR003034 -
Spst11g01401 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 521 630 IPR013083 -
Spst11g01401 1062 ProSiteProfiles SAP motif profile. 92 126 IPR003034 -
Spst11g01401 1062 MobiDBLite consensus disorder prediction 725 747 - -
Spst11g01401 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 354 IPR013083 -
Spst11g01401 1062 SMART PHD_3 297 349 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01401 Spst-Chr11 38383388 38394372 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst11g01401 PHD 3.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01401 - - gmx:100793735 1468.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00574 5 4744912 4766033 Spst11g01401 11 38383388 38394372 PCT