Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01400 ATGGGGAAGAAGAAGCAGAAAATCGTACTTCCGCCGGAGCTTCCGCCAGAGATTCCGGACGACGAAGTTGAGGTTTCCGACGATGACCTCCAATTCATCAAAGAGAATCGCAGCTATGCCGCCTTACTCTCCAACTTGGACACCCATTCAATCACTAAGCATGTCACACGGGTTGCTGATGCCAAAGACGATTCATTAGAGAAACTTTATGAGAAACGCATGCTAAAAAATGCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATCAAGACATTGGATGGAAAACTCCATTACCGGACAGCTACAAATACAGTATCAGAAAATGATCCAAGTCGAGAGGGAATTGAAGAGGATCTCAATGCGGATGAAGGTATGGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTTAAGAAAATGAAAAAAGAGGCAAAAAATCGGGGGAAAGAGGTTGCTGAAGCTGAAGTGGAAGAAACACCACAAGCAGCAGTGCTGGCTGAGGTAAAGGAAGATCTTTCAGCTGAGGAGGCATTTGAAAGTAAGAAGTGTAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCAACATTAAATTTCTGAAAGAGATGGTGCAGATATCTAAAGATAACGATCAGACCATTGTTAAACTTGGACTTCTATCCCTCTTGGCAGTTTTCAAAGATATTGTCCCTGGTTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAAATGAAGGTTTCAAAGACTGTTAAAAAGATGCGTTATTATGAGTCTACTCTTCTTTCAGCATACAAGGCATATTTGCAAAGGCTGGTAGCCTTGGAGAAGAAGCCTTTATTTCAGCATGTAGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGTTTGTTGGATGCTACAGTCAGAAACATAAGCTCTACGAATGATGCTATAAGGAAAGTTTGTTGTTCCACAATTAAATCACTCTTTACAAATGAGGGTAAACATGGGGGTGAAGTTACTGTGGATGCTGTTCGATTGATTGCCGATTATGTTAAAGCTCATAATTGCCAATTGCACCCAGATTCTGTTGACGTTTTCTTGTCCCTTTCATTTAATGAGGATCTCTTGAAGTCTGGAAAGATAGAAGAAGATCAGAAATTAAAAAACAAGAAAAGTAAGAAAAGGAAAAACTTGGAGGCCTCAAATAAATTGGTGGAGAATGATAGAAAGAAAAGTAGGCAAGAATCGATTTCTAAGACAAGAGAAGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTGCCCCAGATGTTATGGAGAGGAAACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACATACTTTCGTATTTTGAAGCATACAAAGCAGTCCATAGGTGCCAGGCCTGAAGCTAATGCTGGGGCATTATCTGCTGCAGTGGAACCCATCCCTCTGCTTTCTCCATGTCTGAAAGGACTGGCAAAATTTTCACATCTGATTGACCTTGATTTCATGGGTGATCTAATGAACCATCTGAAAGTACTTGCTTCTGGAAGTAGCAACTCAGGCAACACTTCGGACAAGTGTTCTAAATGCTTGACTGTATCAGAACGTCTACAATGTTGCATCGTTGCTTTTAAAGTGATGAGGAACAATCTTGATGCCTTGAATGTTGATTTACAAGACTTCTTTATCCATCTTTACAATCTTGTACTTGAATACAGGCCAGGAAGAGATCAAGGAGAGGTGTTGGCAGAAGCTTTGAAGATAATGTTATGCGATGACAAGCAACATGACATGCAAAAGACTGCTGCATTTATAAAAAGATTAGCAACATTTTCACTATCTGTTGGATCAGCAGATTCCATGGCTGCCTTGGTCACAATAAAGCATCTCCTTCAGAAGAATGTTAAGTGCAGAAATTTGTTGGAAAATGACATTGGAGGAGGCTCTGTTTCTGGCACAATTCCTAAATATCTACTATATTCCACAGACCCCAATTTAAGTGGTGCCCTTGCGTCAGTACTTTGGGAACTCAATCTTTTGTCCAGCCATTATCATCCATCTATATCAACAATGGCCTCGGGCATTGCATGCATGAGTACTGCGCATAACCAGGTCCTTTTATCCAAGTCCTCTCCTCAACTAGCTTTTAAGGAAATGTCTCTCGACCAGGAATTGTGTTTCACACAGCAAAGTGGCAGTATAAAATTAAATAACAAGAGGAGACGAACACATGTCCCTGCTACTTCACCTTCCATAGCTTCCACAACAGTTACGAGTTCATTTGATGACAAAGAGTTGCAGAGGAAACTTATTTCCCATTTTGTGGTTCATCATGACATCAAGGAGAATGAAAGGCTGAGAAAGGAGCTGGACAGGACTACGCTATCACTACAGCTATATGAACAATATAAGAAACAGAAGAAACTATCAAAACCAAGGAGATGA 2499 0.4078 MGKKKQKIVLPPELPPEIPDDEVEVSDDDLQFIKENRSYAALLSNLDTHSITKHVTRVADAKDDSLEKLYEKRMLKNALKKEKEETGLQVDRVDALPIKTLDGKLHYRTATNTVSENDPSREGIEEDLNADEGMVKLTKAEKRAKLKKMKKEAKNRGKEVAEAEVEETPQAAVLAEVKEDLSAEEAFESKKCKLAELGNALLTDPESNIKFLKEMVQISKDNDQTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVKKMRYYESTLLSAYKAYLQRLVALEKKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNISSTNDAIRKVCCSTIKSLFTNEGKHGGEVTVDAVRLIADYVKAHNCQLHPDSVDVFLSLSFNEDLLKSGKIEEDQKLKNKKSKKRKNLEASNKLVENDRKKSRQESISKTREEVEADYKAASFAPDVMERKQMQTETLSAVFETYFRILKHTKQSIGARPEANAGALSAAVEPIPLLSPCLKGLAKFSHLIDLDFMGDLMNHLKVLASGSSNSGNTSDKCSKCLTVSERLQCCIVAFKVMRNNLDALNVDLQDFFIHLYNLVLEYRPGRDQGEVLAEALKIMLCDDKQHDMQKTAAFIKRLATFSLSVGSADSMAALVTIKHLLQKNVKCRNLLENDIGGGSVSGTIPKYLLYSTDPNLSGALASVLWELNLLSSHYHPSISTMASGIACMSTAHNQVLLSKSSPQLAFKEMSLDQELCFTQQSGSIKLNNKRRRTHVPATSPSIASTTVTSSFDDKELQRKLISHFVVHHDIKENERLRKELDRTTLSLQLYEQYKKQKKLSKPRR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01400 832 Coils Coil 396 430 - -
Spst11g01400 832 MobiDBLite consensus disorder prediction 401 436 - -
Spst11g01400 832 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 819 IPR016903 -
Spst11g01400 832 MobiDBLite consensus disorder prediction 1 22 - -
Spst11g01400 832 Pfam Nucleolar complex-associated protein 190 280 IPR011501 -
Spst11g01400 832 Pfam CBF/Mak21 family 555 710 IPR005612 -
Spst11g01400 832 MobiDBLite consensus disorder prediction 413 436 - -
Spst11g01400 832 Coils Coil 146 166 - -
Spst11g01400 832 SUPERFAMILY ARM repeat 204 649 IPR016024 -
Spst11g01400 832 PIRSF Noc3 1 812 IPR016903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01400 Spst-Chr11 38366400 38376761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01400 1 808 Core DNA Replication Machinery Family AT1G79150 57.875 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01400 K14834 - gmx:100794797 1360.13