Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01396 ATGAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTACTGAGTGAACTAGAGAGGCTGTTTGGCATGGAAGGCCTTCTAAAAGATCCTGACAAGGGATGGAGGATCCTATACACTGATAGTGAGAATGACATAATGGTTGTGGGAGATGACCCGTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAGATGACAATTGGGATGATAAGTGATGACACTCACAGCTGTTTGGAAGAGGCACCAATCATTATGGAAGCTTCTAAGTCTTCCTCAGTGGGTCAACCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 381 0.4331 MKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPIIMEASKSSSVGQPDYSPTAVRV 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01396 126 FunFam Auxin response factor 1 87 - -
Spst11g01396 126 ProSiteProfiles PB1 domain profile. 1 82 IPR000270 GO:0005515
Spst11g01396 126 Pfam AUX/IAA family 45 83 IPR033389 -
Spst11g01396 126 SUPERFAMILY CAD & PB1 domains 2 77 - -
Spst11g01396 126 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 87 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst11g01396 126 Gene3D - 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01396 Spst-Chr11 38352678 38353272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01396 2 126 B3 DNA Binding Superfamily AT5G60450 74.400 4.35e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst11g01396 AUX_IAA 1.7e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01396 - - gmx:100783513 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00573 5 4740079 4741521 Spst11g01396 11 38352678 38353272 PCT