Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01390 ATGGCCCACGCGTCGAATTTCTCGACAAATGTGCAGCACACACCACAGTCACTCACTCACTCAGATCCAGATGCAGAAGTGGTAGCTCTGTCACCTAAGTCCCTCATGGCCACCAACCGTTTCATATGTGAAATTTGCAACAAAGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGCCACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGAAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCACCATGACCCCTCTAGAGCCTTGGGAGACTTGACAGGCATAAAGAAGCACTATAGCCGAAAGCATGGGGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAGAAGTATGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGATAGCTTCATAACGCATAGAGCCTTCTGTGACGCTTTGGCTGAGGAAAGTGTGCGGATATCAACAGTTCCAGCAGCTTTTAGCAACTTGAGAAACGACCATCATTTGACCAATGCCCAAGCTTCGAGGATGCCTCAGATTTTTTCCGGGTTTCACTCAGATCAATTCGGTGGTTCGGGAACATCAGAACCGCTGGTGAATTATGCTGATCCAAACCATCATCATCAACAAGAAAAGCTAAGGCTACCACTGTGGCTAGACCACCAGGCCAATCCGCAAGGACTACACCACCACCCTCTTAACTTCCCAGTCAAACCAAGTGCTTTCACTTCTTCGGGGCCAAACCCTGTGCCTGATGTGGTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCATCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCAAATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGTGCAAGCTCTAACTTGTACTTGAGTAGCAATCAGAACCCACCTCACTACATGTCAGCCACCACACTGTTGCCGAAAGATGTTCAAATGGGATCTACGAGGGTGAGCGACAACGCGTTTTGCTCCACGGGCAGGAATATAAACAGCAGCAACAACAATATTGTCAACAACGCTGTTGTTGAGGTCCAGAAGCTGAACGAGTTGGTGAGCGTGGAAGGGTGTACCAACCTTGGAGGTGGTGGTGGTGGGTATATATTAAATGGTGACTCAAACAACTCGTTTGTGGTTGTGAATGGCAGCAAGGGTTTGGAGCACATGCTGATGCCGGTGGATGAAGAGACAACAGCATCAATCATGGGAAAGCAATTACACTCAATAAGCTCACACAACAAAAATCAACTTGGTTTAACCCGAGATTTTTTGGGTGTGGGAGATAATAACATTGAATCGATAAGGAGACCCTTTTTTCAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCATGAACCTGCAGAGCCAGTACGGTGGACACTATATCTAG 1521 0.4721 MAHASNFSTNVQHTPQSLTHSDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRISTVPAAFSNLRNDHHLTNAQASRMPQIFSGFHSDQFGGSGTSEPLVNYADPNHHHQQEKLRLPLWLDHQANPQGLHHHPLNFPVKPSAFTSSGPNPVPDVVQTMDMFGPQFVNYRYPEASFGGANLSVLPPNGLKQEQEENKGDLSHSASSNLYLSSNQNPPHYMSATTLLPKDVQMGSTRVSDNAFCSTGRNINSSNNNIVNNAVVEVQKLNELVSVEGCTNLGGGGGGYILNGDSNNSFVVVNGSKGLEHMLMPVDEETTASIMGKQLHSISSHNKNQLGLTRDFLGVGDNNIESIRRPFFQQDLVEFNAMGSASAMNLQSQYGGHYI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01390 506 Gene3D Classic Zinc Finger 96 175 - -
Spst11g01390 506 Gene3D Classic Zinc Finger 19 94 - -
Spst11g01390 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 480 IPR031140 -
Spst11g01390 506 SUPERFAMILY beta-beta-alpha zinc fingers 40 138 IPR036236 -
Spst11g01390 506 FunFam protein indeterminate-domain 12-like 20 89 - -
Spst11g01390 506 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Spst11g01390 506 MobiDBLite consensus disorder prediction 1 21 - -
Spst11g01390 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 63 IPR013087 -
Spst11g01390 506 MobiDBLite consensus disorder prediction 321 337 - -
Spst11g01390 506 MobiDBLite consensus disorder prediction 1 23 - -
Spst11g01390 506 FunFam protein indeterminate-domain 5, chloroplastic-like 96 175 - -
Spst11g01390 506 MobiDBLite consensus disorder prediction 306 337 - -
Spst11g01390 506 SMART c2h2final6 41 63 IPR013087 -
Spst11g01390 506 SMART c2h2final6 118 138 IPR013087 -
Spst11g01390 506 SMART c2h2final6 83 113 IPR013087 -
Spst11g01390 506 Pfam Zinc-finger double-stranded RNA-binding 41 63 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01390 Spst-Chr11 38296343 38299785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01390 22 188 IDZ Gene Family AT3G45260 86.228 7.65e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g01390 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01390 K25870 - gmx:100817691 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00565 5 4593952 4596501 Spst11g01390 11 38296343 38299785 PCT