Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01365 ATGGGCGACACCCATCTCTCTCCCTCTGAAAACCTAGACTCAACCAACGGTCATGATTCTACCGAGGAGAAGCAAAACCTTGCACAAGACTCTCAAATCAATCAAGAAAACGATGACGTCGTTCCGACCAACAAACGGAAGAGGGACGACGACGGCGAGGAACGTTCGCTTCATCCGCTGTGGAAGACCAGTCTCTGCTCTTTCTACCGAAGTCACAACAACTCATGCAACCACGGCGACACGTGCCGCTACGCGCACGGCGAAGAGGAGCTCCGCCCTCGTCCCGATAACACGTGGGACCCGACCTCCGAGCGAGCAAAGAAGGCATTGAAGACCGAGACTGGCGAAAATTGCGCCGCCTCGGAGGACGTCATGATGACGGAGGCTGTCATCGACGGCGAAGACGACGACGTTTGCGGCTCCAATCACGTGCTTAGCAAATGCCTGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTATTACATTTGAGGATGAAGAACAATTGAAGAGTTCTTCACAGGATTTAGAAGGAAAAACAATTGGCAACAAAACCGTAAAGGTTGCTGATGTCATTCCTCGGTCATTTGAAAAGAGTAATAACTCCAATGTTGTTTCCCATCAAGAATTCGATGAGGGGGTTGATGCGCCTTCGAGTGGAACTTTGGATGCCGAAACAAACGATGTTAAGTTGGCTGTTGATGGTTCTGTGTCTAAGACAAGAAACTTGCGTAATGTAGTGACACCTCTCGCTCACATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAACCTCTCTCATGCAGATTCTGAAAAAACTTACTAGAAATGCTCGCAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAGTGGATTGTCAAATCTAGGGAAATAGGTGGCCTTCCGTGCAAACTAGAAGGTATTATTGCATCTCCAATTGTAAATGGGTACCGTAACAAGTGCGAATTCTCTGTTGGATATTCTCTACAAGGCAATGTGACTGTAGGTTTCATGCTCGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTTGACTGTCCAAATGTTTCAACGATCTCATGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGCACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTTACAGTCCGAGAAGGGAGAACAAATGGGAATACTGTTGATGCTAAAACTTTTGGTGGCATTGCAGAGGTCATGCTTGTTGTGCAGGTTTCTACTGCAAACTTTGATAATGCACAAGTAGCTGTTGAATTTAAGAGGCTTGCTCAGGCAGTTGTTGCTGGAGCTACTTCGCATTGTCCACCATTACCCCTCACCGCTCTGTTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCTGCTGATGCACCACTGCATTCGCTTCCACTTCCTAAAGCAAGTGCGGATCCTGACTTGGATGAAAACAATAATACCATGGATGTAAGGATCCATGATTATATCAACAATCTCCGGTTCTCTATATCTCCAACAGCATTTTTTCAGGTTAACACCCTTGCTGCTGAGAAGTTGTACTCGCTTGCTGGAGATTGGGCATGCTTAGATCGTGATACATTACTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCGGTATCTGATGCCCATATGAATGCTGAGATTAATGGCATAAAAAACATTAGATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCCTTGTTAAGGGAATACTTAAATGTTACGAAGGAACAAAATGATCCTAATACCTCTAGAAGGGGCAATGACATTCCTGATGATAGTGCCTGCCCAGAGCCTAAAAATGGTGAAATGGCATCTCACGTTCCAGAAAATAGCAATGCAGAAGTTGCAGGTGAGGTTCAGAAGGGTAGAACTTCTGAACAAGTTGATGGGATATCTGAACAGGCGGAGAACGTGACAGGATCTCAGTTAAGGAATTGTTTAAATGTGCCTAAGGAACAAAGTGATGATCCAAATGATTGTGGAAGTGGCAATGACATACCTGGGGATGGTACCTGCCCAGCGCCTGAAACCAGAGAAATGACATCTTGTTCAGAAAATAGCAATACAGAAGTTGGAAGTGAGGTTCAGAAGGGCAATTCTGTTGAAAATGGGAACACTTCCATGCAACAGTTCAGAAATGTTGTTGCCATTGTCGATCCTCCACGTGCTGGGCTTCATCCAACTGTGATCAAGGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTATATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCTCCCATAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCACGCCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2607 0.4484 MGDTHLSPSENLDSTNGHDSTEEKQNLAQDSQINQENDDVVPTNKRKRDDDGEERSLHPLWKTSLCSFYRSHNNSCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGENCAASEDVMMTEAVIDGEDDDVCGSNHVLSKCLGIAFKHAKKKKGMMIGFITFEDEEQLKSSSQDLEGKTIGNKTVKVADVIPRSFEKSNNSNVVSHQEFDEGVDAPSSGTLDAETNDVKLAVDGSVSKTRNLRNVVTPLAHMAYADQLEQKKTSLMQILKKLTRNARKACPNGVSLPEWIVKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLQGNVTVGFMLGNFREGVTAVEEAVDCPNVSTISCKYATIFQEFLQHSDLPVWNRFKNTGFWRQFTVREGRTNGNTVDAKTFGGIAEVMLVVQVSTANFDNAQVAVEFKRLAQAVVAGATSHCPPLPLTALFVQDHQGISNVAPADAPLHSLPLPKASADPDLDENNNTMDVRIHDYINNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLDRDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHMNAEINGIKNIRFICSKAEDVMGSLLREYLNVTKEQNDPNTSRRGNDIPDDSACPEPKNGEMASHVPENSNAEVAGEVQKGRTSEQVDGISEQAENVTGSQLRNCLNVPKEQSDDPNDCGSGNDIPGDGTCPAPETREMTSCSENSNTEVGSEVQKGNSVENGNTSMQQFRNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTQHCELVMLLER 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01365 868 Coils Coil 262 282 - -
Spst11g01365 868 MobiDBLite consensus disorder prediction 1 15 - -
Spst11g01365 868 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 252 868 IPR010280 GO:0006396|GO:0008173
Spst11g01365 868 Gene3D Vaccinia Virus protein VP39 732 868 IPR029063 -
Spst11g01365 868 SMART c3hfinal6 60 88 IPR000571 GO:0046872
Spst11g01365 868 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 61 88 IPR000571 GO:0046872
Spst11g01365 868 Gene3D - 52 94 - -
Spst11g01365 868 MobiDBLite consensus disorder prediction 40 55 - -
Spst11g01365 868 MobiDBLite consensus disorder prediction 721 749 - -
Spst11g01365 868 MobiDBLite consensus disorder prediction 621 749 - -
Spst11g01365 868 Pfam tRNA (Uracil-5-)-methyltransferase 752 804 IPR010280 GO:0006396|GO:0008173
Spst11g01365 868 Gene3D Vaccinia Virus protein VP39 525 622 IPR029063 -
Spst11g01365 868 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 78 868 IPR045850 -
Spst11g01365 868 ProSitePatterns RNA methyltransferase trmA family signature 1. 763 795 IPR030390 -
Spst11g01365 868 MobiDBLite consensus disorder prediction 669 704 - -
Spst11g01365 868 Gene3D - 323 524 - -
Spst11g01365 868 CDD AdoMet_MTases 552 606 - -
Spst11g01365 868 ProSiteProfiles Zinc finger C3H1-type profile. 60 89 IPR000571 GO:0046872
Spst11g01365 868 SUPERFAMILY CCCH zinc finger 58 93 IPR036855 GO:0046872
Spst11g01365 868 MobiDBLite consensus disorder prediction 1 55 - -
Spst11g01365 868 Pfam Methyltransferase domain 548 608 IPR025714 -
Spst11g01365 868 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 254 868 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01365 Spst-Chr11 38158154 38163064 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst11g01365 tRNA_U5-meth_tr 1.1e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01365 K15332 - gmx:100777601 1415.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01365 11 38158154 38163064 Spst11g01365 11 38158154 38163064 ECH