Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01364 ATGCACCCAGCAGCAATAAGTAAGTGCAAAATGAGCACAGAGGAAAAGCCTGGGAATGAGGAACATGATGCTGATTCTTGCAGAAGAACAGTTTCTCTTCCAATTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCTCACATGTTCCTCCTAGGAAGCGACAGAATCTTCTCCTAGAAATACCCTCAAGAACAGAAGATAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACTCCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCTACACATAACTCTCCTGGACCTTCAACCTCAAGAGGCAAATCAACCATACGAAGCCTGCTTCCAAAACTGAGCTTCAGGTATCGAACAGCAGATATTGAAAAGGCAAATACTGCATCTCTAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATCTCAAGATCGTTGTCTCTTACTAAGATTTTTACTCCTAGGATTAAGAGAACGTCGTCATTACCATTTGATGAGATTAGACAATCAAACAATGAATCTTCTCATGGTGGATGTGTTGGTGGTCCTCAAAATAAAAAAGAAGCCAAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGATAAAAGTTTAAGAAGGATGGATTCATTTTTTCGCATTGTTCCCTCCACTCCTCGAGCAAAGGAAGGAGATGAATTGTTAGACATGTCAACAAATGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGCGCTATTAAATGGTTCACAATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAAGAGGTTCGGAACCTACCTGTCACTCTATTACGGATACAAAGTGTTCGAAATCGGAATAATGGTGCAAATAGGTCTCAGTTGGAAGATGCAAATGGATACAGGGTATGGCAGGAAGTGCCAGTTCTTGTCATTGTCAGCATGCTTGCCTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCGTTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCTTCTGTCCAGTTTGCCCTAGTGGTTCTTTTTGCCCATATTTTTTACTCCGTGGTTCATGTGCAATCAGTTTTGTCTATTCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTTTATAGATGGAGAAGAAGATTGCAGGCTTTGTCAGAACAGCGACAAGGTCCTCAAGTGATGCCACAAGCAGGACAAAATGCACGATCTTCAAACACTCCTCGTTCAGATTCAAGTTCAGGTCCTTCCAACCACAGTCAACCTGTGGTGCAAAATCGACAGAACTCAAATCAGAGTTAA 1575 0.4241 MHPAAISKCKMSTEEKPGNEEHDADSCRRTVSLPIQKVDDPMGITEETSHVPPRKRQNLLLEIPSRTEDSSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSTIRSLLPKLSFRYRTADIEKANTASLEVSSSGIGEKPSISRSLSLTKIFTPRIKRTSSLPFDEIRQSNNESSHGGCVGGPQNKKEAKRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRAKEGDELLDMSTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFTIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRSQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQSVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQALSEQRQGPQVMPQAGQNARSSNTPRSDSSSGPSNHSQPVVQNRQNSNQS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01364 524 ProSiteProfiles Zinc finger RING-CH-type profile. 264 326 IPR011016 GO:0008270
Spst11g01364 524 SUPERFAMILY RING/U-box 268 323 - -
Spst11g01364 524 PANTHER OS02G0165000 PROTEIN 26 484 - -
Spst11g01364 524 Pfam RING-variant domain 272 319 IPR011016 GO:0008270
Spst11g01364 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 327 IPR013083 -
Spst11g01364 524 MobiDBLite consensus disorder prediction 100 122 - -
Spst11g01364 524 MobiDBLite consensus disorder prediction 242 262 - -
Spst11g01364 524 MobiDBLite consensus disorder prediction 13 28 - -
Spst11g01364 524 MobiDBLite consensus disorder prediction 185 210 - -
Spst11g01364 524 CDD RING_CH-C4HC3_MARCH 272 320 - -
Spst11g01364 524 MobiDBLite consensus disorder prediction 1 57 - -
Spst11g01364 524 SMART ringv_2 271 320 IPR011016 GO:0008270
Spst11g01364 524 MobiDBLite consensus disorder prediction 478 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01364 Spst-Chr11 38143277 38148717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01364 269 375 C3H Transcription Factor Family AT2G37950 35.965 2.28e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01364 - - gmx:100815566 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00557 5 4532159 4535731 Spst11g01364 11 38143277 38148717 PCT