Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01347 ATGAAGGAAGGTGAGAAGGTATTGGATCCACAGCTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCGCAAGTGAACTCCAAAGTCTTCTACTTCCCACAGGGTCACGCTGAACACGCTCATACCAACATTGATCTCAGGGTTCCGCCACTTATTCTCTGCAACGTTGAAGCCGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTCTTCGCCAAACTGAGTCTGGTTCCTCTCAGAAACTCGGACCTTGGTCCGGACTCGGAGGGGGGTGCTGACGCGGCGGAGGCTTCGGAGAAACCTGCGTCGTTCGCGAAGACTCTGACGCAGTCTGACGCCAACAATGGTGGCGGTTTTTCGGTGCCACGGTACTGCGCGGAGACCATTTTTCCGCGGCTGGACTACTCGGCGGAGCCACCGGTGCAGACGGTGGTGGCGAAGGACGTGCACGGGGAGACGTGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGGCACTTGCTGACGACAGGTTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGAGACTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATTGGGTGTGAGGTGTGGAACTCCGCTTCTGGTTCAGGGTGTGGAAGTGGAGGTGGAAGTGGGAATTGTGGGATTGGCCCTTATGGGCCTTTCTCTTTTTTCTTGAGAGAGGAGAATAAGAGTTTGAGGAACGGTGGTGGTGGGAATTTGAGTGGAAGGGCTAAAGTGAGGCCTGAGGCTGTTGTTGAAGCTGTGACACTCGCTGCTGCTAATAAACCTTTTGAGGTTGTTTATTATCCAAGAGCCAGTACTCCCGAGTTTTGCATTAAGGCTTCTGCTGTGAGGGCTGCTATGAGGATCCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGGATTAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGACCCCATCCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACTTGCCAGTCATCAATTTCACACCCTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCAGAATTCCCCCTTGATGTTCAATTTCCAATACCAACGTTTTCAGGCAACCAGCTCGGGCCTAACAACCCCTTGTGTGGTTTTTCGGATAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAACATCACTATCAGATCTCCACCTTCATAAGAAACTGCAGTTGGGGTTGCTTCCATCTAATATTCAGCAACTTGGAGTGTATAGTGGGATTTCTAATGGTACCACTACCAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGACCGTGGGGAAATCTAGCAAGAATTTGGAGAAATCTGATGATGTTAAGAAACATCAGTTTTTGCTTTTTGGTCAACCAATACTCACCGAACAACAAATTTCTAGAGATGTGTTGTCTCTTGGGAAAAAATCACCGGATGATGTTAAGGAAAAAGAGAAGTACGTTTTGGATAATTCCCAATCTGCACTCTCACAGCAGTTTTCACCAGGGAAACCTTCTGCTGCTGAGTTCTCTTGGCAACTTAGCTTGGATACTGGTCATTGTAAAGTTTTCTTGGAGTCAGATGATGTAGGAAGGACCCTAGACCTATCACGGCTTGGTTCTTATGAAGAGCTGTATAGGAGACTTTCCAACATGTTTGGGGTTGAAAGATCTGAGATTCTGAATCACGTGTTCTACTATGATGCAGCAGGTGCTGTTAAGCAAACTGGAGAAGAACCCTTCAGTGAATTCATGAAGACAGCGAAAAGATTGACAATTCTGACGGATTCAGGCAGTAAAAATGTTAAAAGGGCCTATATTACAGGAACTCGGAATGTTGAACACGGACTTGATGCATCAAATAAAACAGGCCCTCTGAGCATATTTGCTTAA 2082 0.4866 MKEGEKVLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNIDLRVPPLILCNVEAVKFMADPETDEVFAKLSLVPLRNSDLGPDSEGGADAAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGDLCVGIRRAKKGIGCEVWNSASGSGCGSGGGSGNCGIGPYGPFSFFLREENKSLRNGGGGNLSGRAKVRPEAVVEAVTLAAANKPFEVVYYPRASTPEFCIKASAVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNQLGPNNPLCGFSDNAPAGIQGARHAQIGTSLSDLHLHKKLQLGLLPSNIQQLGVYSGISNGTTTNHDKSKESLSHLLTVGKSSKNLEKSDDVKKHQFLLFGQPILTEQQISRDVLSLGKKSPDDVKEKEKYVLDNSQSALSQQFSPGKPSAAEFSWQLSLDTGHCKVFLESDDVGRTLDLSRLGSYEELYRRLSNMFGVERSEILNHVFYYDAAGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNVKRAYITGTRNVEHGLDASNKTGPLSIFA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01347 693 FunFam Auxin response factor 311 384 - -
Spst11g01347 693 SMART B3_2 105 207 IPR003340 GO:0003677
Spst11g01347 693 Gene3D - 103 207 IPR015300 -
Spst11g01347 693 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
Spst11g01347 693 Gene3D - 579 666 - -
Spst11g01347 693 CDD B3_DNA 104 205 IPR003340 GO:0003677
Spst11g01347 693 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Spst11g01347 693 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Spst11g01347 693 FunFam Auxin response factor 103 207 - -
Spst11g01347 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst11g01347 693 Gene3D - 311 383 - -
Spst11g01347 693 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst11g01347 693 ProSiteProfiles PB1 domain profile. 581 661 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01347 Spst-Chr11 37974255 37977274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01347 1 665 B3 DNA Binding Superfamily AT4G30080 57.849 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst11g01347 B3 1.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01347 - - gmx:100814686 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00544 5 4412678 4415523 Spst11g01347 11 37974255 37977274 PCT