Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01345 ATGAGTAGTGTAGGGATTTCGTGTATGGATCCTACTCTCAAGCTCTGCGCCTTCTTCCTCATTCTTCTCGGATTAGGTAACAATCATTCCTCCTTTTTGGTGAATAGTTCTTTAGCCGAAAATGACTTCGGACAGTGCGAAAGAGTTGTTAAGAGATGGACGCGTTCTTCGCTGGATGAGGAAATGACAAAAGAGGATAAGCATACGCTGAGGGATTTGCTGTTTTTCTTGCATGTTCCTAGAACGGGAGGGAGAACTTATTTTCACTGTTTTTTGAAAAAGTTGTATCCCAGCTATCTCGAGTGTCCTCGCTCTTATGATAAGTTGCGCTTTGATCCAAGTAAACCAAAATGCAGGCTGTTAGTTACACACGATGACTATAGCATAACATCCAAACTTCCAAGGGAGAGAACTTCTGTTGTTACCATACTTAGGGATCCAGTTGATCGTGTCTTCAGTACATATGAATTTTCAATCGAGGTTGCAGCTAGATTTTTGGTGCATCCAAACTTGACATCTGCAACAAATATGGCTTTACGCCTAAGCTCTAAGACTAAAGGAGTAAGCACACTGGATATCTGGCCGTGGAAGTATCTGGTTCCATGGATGAGGAAAGACCTATTTGCTAGGAGAGATGCTAGGTATAGTGGGGGACAGAATATCATTCAGAACAATGATTCTTATGACATGGAAGATTTTGCAATGCCATTACAAGAATACATCAATGATCCTGTGGCTGTGGATGTTGTACATAATGGAGCCACATTCCAGGTTGCAGGTTTGACAAACAATTCTTATATAGCAGAAGCACATGAAGTGCGCCATTGTGTACAGAAATACAAGACTCTTGGTAAATATGTGCTACAAGTTGCAAAGAAGAGACTGGATGACATGTTATACGTTGGTCTTACCGAGGAGCACAGAGAATCCGCAACAATGTTTGCAAATGTAGTTGGTACTCAAGTGATATCACAACTTAATGCACCAAACTCTAGCCTGGAAACATCTGATAATACAGAAAGGATCTCGGATTCTGATCCTGATAGCAGTGACCATGAGAATAGCACTTTGAACAGGGGAGAAAGTGGGGTTAATTCAAGTGAAGGGGGAGAAGCAACAGAATCTAATATGACTGTTGGAGAACTAATGGATGCTTATGAACTCTGTATTGCCAATTTACGAAAGGCCCAGTCACGCCGACGTATCTCTTCTTTGAAGAGGATTTCTCCAGTGAACTTTACAAAGGAGGCACGTCTTCAGGTTCCTGAAGAGGTTCGCCGTGAGATACGATCTCTTAATGACCTCGACTTGCAGCTCTACGAATATGCGAGATCCATTTTCAATAAACAGCATAAAACCTCATTGCTGATTAATGAGGATAGTTGGGACAACGTGAACAGTGCCTATGGCCTCTGGAGGGTCGTTACACTAGCAATTTCTTTTCCAATAGTGATGGATGGTTGGTTTTTTAGTGTTTCTTTTGGAGGTGTTGCAAGTATGAAGGACTGGTTGTTTTTTGACAAGAATTTCAATGGTTTCTCGGACGATATTCTTGATGTCATGGACATCGAGTGTTTGAACTTCCCCCTTGATGATGTGGAAACTGATGATGGTGTGGAACAAGATTGGGATGCTCAGTTCAAACTCCTTGAAGAGCCTTCGCTAGGAATTTTTCCAGTACAATCGTCTCAGCTCTTTGCTCATGCTCAAAATGAGAATGTGAAGCTCGACACGAGTTTCTCTGCTTCTGTGAGTTTCCTGCCCTCACTTACGCTCCGTGAATCGATGCCTTTGACATGTTTCCCTTTGCCTGATTTTGGCTATGTGAAACTGAGATATGAGTATGCCAACTTTGAAGCATACATTTCGACTGTGGATTACTGCAGTGATGTTGTTCGGGAACTTTGTCAGATTGAAAAAAAGAAACATTGGCAATTCAAGCCAAAAAATAAGCAAGTGATGTTGAGTGAGTGGGATGGGGAGTTGGTTCCATCCTCCTTAGGTTTTTTTCTCCAGGACAGTGACAAGAAGAGTAAAGCTAACTTGGTGGTGTTACCGAAGACTGCAGGACCTACACATAACAAAACTATTCCTATCCAGAAAATCTCTTTAAATGGGAAAGATTTGCTGCAATTCCAAACCAACAGCCCAGTTTCTGTTTTTGAAAGAAGCGGTAGTTCTCCCTCGGTTGAGAACTCAAACTTTGAGTTACCTGTCATCCCAACAAAGCGTCCCAGAAGCAAACGCAGGCCTCTGTCAAACATCAGCCTGCTATACTCTATTCCTTTCATCTTAACATCACCAGCTTTTCAAGAATGTCGAAGGACAGCTGTCTTCAAATCAGATATAGAAACAAAACCAAGCATGGTAAAAAAGCAGAGGAAAAAGGATATTCCCCTGCTAGCTAACAAAATTGAGATGAAGAGATCCTCATCAGAGGAATCAGTTGCACTGAGAAAATGCTTGCATTGTGAGGTGACAGAGACACCGCAATGGAGAGAGGGACCAATGGGTCCTAAGACCCTATGCAACGCTTGTGGAGTTCGGTACCGTTCTGGCAGGCTCTTTGCTGAATACCGGCCTGCAGCTAGCCCCACTTTTGTATCATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCCACCCAGCATTGCCATGAGATGAAAGCACATGCATTCCAAATCATAATCTACGTTAATAGCCTTCCATCCTCCATGTCCATGTGGGGCCCTCACCTTACGTATGGCATCGATGGGAACGAGGAAGAAGAGGGCATGAACATGACCCCATCTTTGTTTGACACACCTACCATGGCATAA 2835 0.4282 MSSVGISCMDPTLKLCAFFLILLGLGNNHSSFLVNSSLAENDFGQCERVVKRWTRSSLDEEMTKEDKHTLRDLLFFLHVPRTGGRTYFHCFLKKLYPSYLECPRSYDKLRFDPSKPKCRLLVTHDDYSITSKLPRERTSVVTILRDPVDRVFSTYEFSIEVAARFLVHPNLTSATNMALRLSSKTKGVSTLDIWPWKYLVPWMRKDLFARRDARYSGGQNIIQNNDSYDMEDFAMPLQEYINDPVAVDVVHNGATFQVAGLTNNSYIAEAHEVRHCVQKYKTLGKYVLQVAKKRLDDMLYVGLTEEHRESATMFANVVGTQVISQLNAPNSSLETSDNTERISDSDPDSSDHENSTLNRGESGVNSSEGGEATESNMTVGELMDAYELCIANLRKAQSRRRISSLKRISPVNFTKEARLQVPEEVRREIRSLNDLDLQLYEYARSIFNKQHKTSLLINEDSWDNVNSAYGLWRVVTLAISFPIVMDGWFFSVSFGGVASMKDWLFFDKNFNGFSDDILDVMDIECLNFPLDDVETDDGVEQDWDAQFKLLEEPSLGIFPVQSSQLFAHAQNENVKLDTSFSASVSFLPSLTLRESMPLTCFPLPDFGYVKLRYEYANFEAYISTVDYCSDVVRELCQIEKKKHWQFKPKNKQVMLSEWDGELVPSSLGFFLQDSDKKSKANLVVLPKTAGPTHNKTIPIQKISLNGKDLLQFQTNSPVSVFERSGSSPSVENSNFELPVIPTKRPRSKRRPLSNISLLYSIPFILTSPAFQECRRTAVFKSDIETKPSMVKKQRKKDIPLLANKIEMKRSSSEESVALRKCLHCEVTETPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVSSLHSNSHKKVLEIRNRATQHCHEMKAHAFQIIIYVNSLPSSMSMWGPHLTYGIDGNEEEEGMNMTPSLFDTPTMA 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01345 944 MobiDBLite consensus disorder prediction 356 373 - -
Spst11g01345 944 Gene3D - 69 361 IPR027417 -
Spst11g01345 944 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 15 453 IPR010635 GO:0008146|GO:0016020
Spst11g01345 944 MobiDBLite consensus disorder prediction 339 355 - -
Spst11g01345 944 FunFam GATA transcription factor 810 897 - -
Spst11g01345 944 MobiDBLite consensus disorder prediction 925 944 - -
Spst11g01345 944 Gene3D - 817 865 IPR013088 GO:0006355|GO:0008270
Spst11g01345 944 CDD ZnF_GATA 820 867 IPR000679 GO:0006355|GO:0043565
Spst11g01345 944 Pfam GATA zinc finger 821 854 IPR000679 GO:0006355|GO:0043565
Spst11g01345 944 MobiDBLite consensus disorder prediction 328 373 - -
Spst11g01345 944 SMART GATA_3 815 865 IPR000679 GO:0006355|GO:0043565
Spst11g01345 944 ProSitePatterns GATA-type zinc finger domain. 821 846 IPR000679 GO:0006355|GO:0043565
Spst11g01345 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 164 IPR027417 -
Spst11g01345 944 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 819 876 - -
Spst11g01345 944 ProSiteProfiles GATA-type zinc finger domain profile. 815 851 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01345 Spst-Chr11 37945520 37960322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01345 712 885 C2C2-Gata Transcription Factor Family AT1G08000 44.253 1.14e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst11g01345 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01345 K22218 - gmx:100810026 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01345 11 37945520 37960322 Spst11g01345 11 37945520 37960322 ECH