Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01329 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCCCAACAACTTCGGCGCGACAAATTGAGGATCCAAAACAGTTCCCAACACTTGCAAGAGTTCCCTAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGCAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATAACTTTTTCCACTGCTTCGAATCCTTTATCAACTCCCAGAAACCCATTTGAGTGTCAAGAGCTTATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCATCCCCTAAAGACCAACAATGTGAACCACGCAACTTGGGTCCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACAACAGCAACACCTTCTCTTCTGTTCTTAATAGCAATGCTTCTGGCGAAATGGCCAATAGAGAAATTCAGAAGCAGTTAGGTGAAATGCATTACCCTCCTTCCTCGTCTTCCTCACCTCCACTTTACCATAATGCTTTGCAGGACATGGCTTATGGCATTTGGGGAGGTAGCAATGGTGAGCCTGTGCTTCATTATCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGGCAAATAGTAGCTCAATGGGTTTCAAAAAGATTAATGAACAAGACACAAATCCTCATCAGGGTTTATCACTGTCACTTTCATCAAATTCACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGACGACCCTACTCAATATTCAAAGTCTGTGAAATCCTCCATGAAGATGAACGTGCTTTCAAACAACACGGCTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGTTACGCCACAATTTTGAAAAGTTCGAGGTTCTTAAAGCCGTGCCAACAGCTGTTAGATGAGTGGTGCTGTCAATATGGTTCAAAGTCTGCGAAGGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCCTCTACTTCTGCAGCTGCAGCTGCTGGTGATACTCTAAATGTTGATGTAAGTGGGGGTGCTGCAAAAGTTGATCGCAGTTCGGGTGCTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGCTAATACTAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCGTTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACCCCTTATGTCTCCTTGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCTTAAAAAATGCTATTTCAGATCAACTGAAGTTTACATGTGAAGTATTGGGAGAGGACTTTTCCATGCCAACCACAACTAATAGTAGTAAAATTGACAATAATACGGCAAGGCTAAGGTGCATGGACCAAAGTTTTCAAAAAAACAAGACCGTGGGGGCTAACATAAACTTCCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGATCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGCCTTTCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTCGTGTGCGTGTTTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAACCCCACAAAGCTTCTAGTAAAAATGACCAGGTTGCTTCTGCATCCGAAGGTAGCAACCAGCCCAAATCAGATCACCAACATGTGAGCAGGTTTGGCACGCATGCATCATCACATGCAATCCCCGAGAAGCATTTTCAGTGTTTGGAAATGGGGTCAACATCCTCAGCAGGCAACGAGGAACACATTGGAATGGATGAAGACCAATGGAATCAAGAAAAGAGGTCAAAACTGGAATGTCAGATTGCTACCACGCCAAACATGGATGGGACAGTGATGGGGTTTATGCCATACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGATCCGTGTCACTCACTTTGGGTCTTAGGCATGATGTTGAAGGTGTACAGCAGCGACAAGAGGAGGAGCTTAGGCGTCAATTCGGAGGGCACATGATCCACGACTTTGTGGGCTAG 2226 0.4506 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMITFSTASNPLSTPRNPFECQELMMAQYGSTSFPHSSSPKDQQCEPRNLGPNWMVNYNESNPNNSNTFSSVLNSNASGEMANREIQKQLGEMHYPPSSSSSPPLYHNALQDMAYGIWGGSNGEPVLHYQANNELRFGGANLWANSSSMGFKKINEQDTNPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSVKSSMKMNVLSNNTAYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVPEWVSRDVSAASTSAAAAAGDTLNVDVSGGAAKVDRSSGASSSVLYSSNENANTNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKFTCEVLGEDFSMPTTTNSSKIDNNTARLRCMDQSFQKNKTVGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEPHKASSKNDQVASASEGSNQPKSDHQHVSRFGTHASSHAIPEKHFQCLEMGSTSSAGNEEHIGMDEDQWNQEKRSKLECQIATTPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHDVEGVQQRQEEELRRQFGGHMIHDFVG 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01329 741 Pfam Associated with HOX 292 462 IPR006563 -
Spst11g01329 741 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 160 609 - -
Spst11g01329 741 SMART prehox3 287 463 IPR006563 -
Spst11g01329 741 Gene3D - 524 586 - -
Spst11g01329 741 MobiDBLite consensus disorder prediction 600 629 - -
Spst11g01329 741 Pfam Homeobox KN domain 538 577 IPR008422 GO:0003677|GO:0006355
Spst11g01329 741 FunFam BEL1-like homeodomain protein 9 524 586 - -
Spst11g01329 741 MobiDBLite consensus disorder prediction 591 630 - -
Spst11g01329 741 CDD homeodomain 521 582 IPR001356 GO:0003677
Spst11g01329 741 MobiDBLite consensus disorder prediction 220 259 - -
Spst11g01329 741 SUPERFAMILY Homeodomain-like 523 587 IPR009057 -
Spst11g01329 741 ProSiteProfiles 'Homeobox' domain profile. 518 581 IPR001356 GO:0003677
Spst11g01329 741 SMART HOX_1 521 585 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01329 Spst-Chr11 37797125 37802271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01329 376 590 Homeobox Transcription Factor Family AT4G34610 52.093 7.46e-66 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst11g01329 POX 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01329 - - vum:124831694 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00528 5 4223095 4228272 Spst11g01329 11 37797125 37802271 PCT