Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01307 ATGCATCGATCCGGGTACGGTAGCGACGGAATATACAGGTCTCTAAGGCCTTCCTTGGTTCTTCCAAACAACCCCAACCTCTCCCTCGTTTCATTCCTCTTCCAGAGCGTTTCTTCTTTTCCATCCAACACCGCTCTCGTCGACGCTCACTCTTCTCAGACCCTCTCCTTCGCGCAGCTAAAATCCCAAGTCGCCACGCTCGCCCACGGTTTCCTCAAACTAGGCATAAACAAAAACGACGTCCTCCTCCTCTTCGCTCCCAACAGCATCCACTTCCCCGTCTGCTTCCTCGCCGCCACCGCCATAGGAGCCGTCGTCTCCACCGCCAATCCCATTTACACCGTTCACGAACTCTCGAAGCAAGTCCAAGATTCCAACCCCAAGCTCGTCATCACAGTCCCAGAATTATGGGACAAAGTCAAAAACCTCAACCTCCCCGCCATGATTCTCAGCACCACCAACCTGCACGACTCTAAAAACGTGGCACCGAACATCACGAGTCTCGATGCGGTTATGGAGATGGCGGGGCCGGCGACGGAGTTGCCGGAGAGCGGCGTTAGGCAGGGGGACACGGCGGCGCTGTTGTACTCCTCGGGGACCACGGGGCTGAGCAAGGGCGTGGTCCTGACGCACGGGAACTTCATCGCGGCGTCGGTGATGATCGGCATGGACGACGACCTAGCCGGGGATGTAAACGACGTGTTCCTCTGCGTTTTGCCGATGTTCCACGTATTCGGGCTGGCGGTGTTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGTCGATGGGGAGATTCGAGTTGGAGGCGTTTCTGAATGCGATTGAGAAGTACAGAGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGCTATGGCGAAGCAGAGTGTGGTTGGGAAGTATAATCTGTCGTCGTTGAAGCGTATTGGGTCGGGTGCTGCTCCTCTTGGGAAAGATTTGATGGAAGAATGTGGCAGGCGTTTTCCTCATGTAGCCGTTTGTCAGGGCTATGGCATGACAGAGACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGATTCGTCATACTGGCTCAACGGGAATGCTGGCTTCGGGAGTGGAAGCTCAAATAGTAAGTGTGGATACACAAAAGCCTCTCCCTCCAAGACAACTGGGGGAAATATGGGTACGAGGTCCTAACATGATGCTAGGTTATCACAATAATCCACAGGCCACGAGATTGACTATAGATGAAAAGGGGTGGGTGCATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTAATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTCGAAGGGCTTCTCATTTCTCACCCTGAAATACTAGATGCTGTTGTTGTCCCATATCCCGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCTCCCAATAGTTCACTGACTGAAGAGCAAATTAAGAAGTTTATTGCTAATCAGGTTGCACCGTTCAAAAAATTGCGAAGGGTGACATTCATCAATAGTGTTCCAAAGACATCTTCAGGAAAAATTCTTAGAAGAGATATAACTGCAAAAGCACGATCCAAAATTTAA 1632 0.5147 MHRSGYGSDGIYRSLRPSLVLPNNPNLSLVSFLFQSVSSFPSNTALVDAHSSQTLSFAQLKSQVATLAHGFLKLGINKNDVLLLFAPNSIHFPVCFLAATAIGAVVSTANPIYTVHELSKQVQDSNPKLVITVPELWDKVKNLNLPAMILSTTNLHDSKNVAPNITSLDAVMEMAGPATELPESGVRQGDTAALLYSSGTTGLSKGVVLTHGNFIAASVMIGMDDDLAGDVNDVFLCVLPMFHVFGLAVLTYAALRRGSAVVSMGRFELEAFLNAIEKYRVTKLWVVPPILLAMAKQSVVGKYNLSSLKRIGSGAAPLGKDLMEECGRRFPHVAVCQGYGMTETCGIVSVENPRVGIRHTGSTGMLASGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMLGYHNNPQATRLTIDEKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEQIKKFIANQVAPFKKLRRVTFINSVPKTSSGKILRRDITAKARSKI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01307 543 Gene3D - 441 542 IPR045851 -
Spst11g01307 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Spst11g01307 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Spst11g01307 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Spst11g01307 543 SUPERFAMILY Acetyl-CoA synthetase-like 20 541 - -
Spst11g01307 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - -
Spst11g01307 543 Pfam AMP-binding enzyme 35 445 IPR000873 -
Spst11g01307 543 CDD 4CL 21 534 - -
Spst11g01307 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Spst11g01307 543 Gene3D - 9 440 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01307 Spst-Chr11 37512258 37516313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01307 1 543 Monolignol Biosynthesis Gene Families AT4G05160 68.373 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01307 K01904 - gmx:100808944 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00510 5 4023597 4027240 Spst11g01307 11 37512258 37516313 PCT