Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01287 ATGTCAGTGAACAGGTTAAAGAAAGCAAGTGTATCTTCATTTATTCTTGATTGTGAAATTGTTGCATATGATCGCGAAACAAAGGAGCTTCTTTCTTTCCAGACTCTTAGTACTCGGGCTCGCAAGAAAGTAGAAATCAAAGATATAAAGGTTAATGTTTGCATATATGCTTTTGATTTGTTGTATCTAAATGGCCAAGAACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTTTATGCCTCTTTTGAGGAGGAACCTGGATTTTTTCAGTTTGCAACAGCAATAACTTCAAATGATGTTGAGGAAATACAGAATTTTCTTGACCAAGCTGTTGGTGCAAGTTGTGAGGGATTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTGCGAAACGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATTTAGGGGACTCACTAGATTTGGTACCAATTGCTGCTTTCCATGGACGTGGAAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAACAATAATGAAGAATTTCAAAGTATTTGCAAGATTGGAACGGGATTCTCTGAATCTGTACTTGCAGAGCGTTCTGCTACTCTTCGTTCGAAAGTCATTTCCAAGCCAAAGTCATACTATAGATTTGGAGAAACAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAAGCGGCAGACCTGACCATTAGCCCTGTTCACCGGGCTGCCGCGGGCATACTAGATCCGAACAAGGGCATATCTCTTCGATTTCCACGACTACTTCGAGTCCGGCATGACAAAGCTCCTGAACAGGCCACATCATCTGAGCAGGTTGCTGAAATGTACAAAGCTCAAAAACACAATCAAGCGAACAACCAAGATGACGATGATGAAGAAGATTATTGA 945 0.4085 MSVNRLKKASVSSFILDCEIVAYDRETKELLSFQTLSTRARKKVEIKDIKVNVCIYAFDLLYLNGQELLQENLRVRREHLYASFEEEPGFFQFATAITSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPAKRSLNWLKLKKDYMDNLGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNNNEEFQSICKIGTGFSESVLAERSATLRSKVISKPKSYYRFGETINPDVWFEASEVWEVKAADLTISPVHRAAAGILDPNKGISLRFPRLLRVRHDKAPEQATSSEQVAEMYKAQKHNQANNQDDDDEEDY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01287 314 FunFam DNA ligase 1 94 - -
Spst11g01287 314 CDD OBF_DNA_ligase_I 152 297 - -
Spst11g01287 314 MobiDBLite consensus disorder prediction 285 301 - -
Spst11g01287 314 FunFam DNA ligase 149 308 - -
Spst11g01287 314 Gene3D DNA ligase/mRNA capping enzyme 2 146 - -
Spst11g01287 314 CDD Adenylation_DNA_ligase_I_Euk 3 147 - -
Spst11g01287 314 SUPERFAMILY Nucleic acid-binding proteins 152 298 IPR012340 -
Spst11g01287 314 MobiDBLite consensus disorder prediction 279 314 - -
Spst11g01287 314 ProSiteProfiles ATP-dependent DNA ligase family profile. 46 182 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst11g01287 314 Pfam ATP dependent DNA ligase C terminal region 169 280 IPR012309 GO:0003910|GO:0006281|GO:0006310
Spst11g01287 314 ProSitePatterns ATP-dependent DNA ligase signature 2. 118 144 IPR016059 GO:0003909
Spst11g01287 314 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 6 311 - -
Spst11g01287 314 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 5 150 - -
Spst11g01287 314 Gene3D - 147 312 IPR012340 -
Spst11g01287 314 NCBIfam ATP-dependent DNA ligase 8 296 IPR000977 GO:0003910|GO:0005524|GO:0071897
Spst11g01287 314 Pfam ATP dependent DNA ligase domain 4 144 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01287 Spst-Chr11 37306367 37310757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01287 1 309 Core DNA Replication Machinery Family AT1G08130 74.679 1.26e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01287 K10747 - gmx:100783155 548.125