Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01286 ATGTCCAAGCCACCCTCCGCCTTCGACGCCATCATGTCCGGCGCCCGCGCCGCCGCTAAGAAGGAGTCCCAATCCAAATCCCGAGAACCGAAACCTCCATCAATCTCCAAGAAAAGAAAATCCCCACAGTCCACTTCCTCACAAAACCCTAAAAACCTCAAATCCCCTTCTCCGCCCACAACCGCTGAACTGGAACAAGCAATAAAACCGGAAGAAACCGTTAAACCGGAAAAAACTGTTAAACCGGAAGAAACTGTTGAACTGAAAGAAGCCGTTAAACCGGAGCCGTGGAAGGTTGGTTTCCTGTCGTCTTCTTCTTCGAATGTGAAGACCGTGGAGCTGAAGAAGCAGGTTCCGCAGCTGAAGAAGAAACCCTCGAGTTTTGATCCCGCTTCGGTGACTGCATGGGAAAAGGGACAGCCCGTGCCGTTCCTCTTTCTGGCCTTGGCCTTTGACATGATTTCTCAAGAATCTGGAAGAATCGTTATCACTGACATTGTTTGCAATGTGCTGCGGACTGTGATGCACCTCACGCCGGAGGATCTTGTTCCCGTCGTTTACCTCTCCGTTAACAGTATTGCGCCGGCGCATGAAGGGCTGGAATTGGGAATAGGCGAGTCGATCATTTCCAAGGCGCTCGCTGAGGCCTATGGAAGGAATGAGGGGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCCAAAGAGAGCCGTTCGTCTCAGCGTATGATGAGGAAGCCTGAAGCATTGACTATTAGGAAGGTTTTCAACACGTTTCGTCTTATTGCTAAGGAATCTGGAAAAGACAGTCAAGATAAAAAAAAAAGTCATGTCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTTTGCTACAGGCAAAGTTGCGAATTGGTTATGGTGAGCAAACACTCTTGGCTGCATTAGGCCAAGCTGCAGTATACACTGAGGAGCACTCTAAGCCACCTCCTGACATTCAGTCTCCTTTAGATGAGGCTTCAGAGATTGTTAAACAAGTCTATTCTGTTCTCCCAGACTATGACAAAATAATATCTGCACTGTTTGCGGAGGGTCTATGGATGCTTCCAAAGAATTGTAAATTTACTCCTGGTGTTCCAATTAAGCCTATGCTGTCAAAGGCAGCAAAGGGTGTATCTGAAATTCTAAACAAATTTCAGGATGTGGAGTTTACCTGTGAATACAAATACGATGGAGAGCGTGCCCAGATACATTACCTGGAAAGTGGCTCAGTTGAGATTTACAGTAGACAATCAGAACGGAACACTGAGAAGTTTCCTGATGTTGCTGCTGCTGTTTCAAGGTAA 1353 0.4678 MSKPPSAFDAIMSGARAAAKKESQSKSREPKPPSISKKRKSPQSTSSQNPKNLKSPSPPTTAELEQAIKPEETVKPEKTVKPEETVELKEAVKPEPWKVGFLSSSSSNVKTVELKKQVPQLKKKPSSFDPASVTAWEKGQPVPFLFLALAFDMISQESGRIVITDIVCNVLRTVMHLTPEDLVPVVYLSVNSIAPAHEGLELGIGESIISKALAEAYGRNEGWIKTQYQKKGDLGLVAKESRSSQRMMRKPEALTIRKVFNTFRLIAKESGKDSQDKKKSHVKALLVAATDCEPQYLIRLLQAKLRIGYGEQTLLAALGQAAVYTEEHSKPPPDIQSPLDEASEIVKQVYSVLPDYDKIISALFAEGLWMLPKNCKFTPGVPIKPMLSKAAKGVSEILNKFQDVEFTCEYKYDGERAQIHYLESGSVEIYSRQSERNTEKFPDVAAAVSR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01286 450 Gene3D - 119 384 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst11g01286 450 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 125 376 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst11g01286 450 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 409 417 IPR016059 GO:0003909
Spst11g01286 450 FunFam DNA ligase 120 387 - -
Spst11g01286 450 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 23 449 - -
Spst11g01286 450 MobiDBLite consensus disorder prediction 21 36 - -
Spst11g01286 450 Pfam ATP dependent DNA ligase domain 385 448 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Spst11g01286 450 MobiDBLite consensus disorder prediction 37 62 - -
Spst11g01286 450 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 342 448 - -
Spst11g01286 450 Gene3D DNA ligase/mRNA capping enzyme 385 450 - -
Spst11g01286 450 Pfam DNA ligase N terminus 143 318 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Spst11g01286 450 MobiDBLite consensus disorder prediction 1 87 - -
Spst11g01286 450 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01286 Spst-Chr11 37303216 37306199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01286 2 450 Core DNA Replication Machinery Family AT1G08130 59.389 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01286 K10747 - gmx:100783155 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01286 11 37303216 37306199 Spst11g01286 11 37303216 37306199 ECH