Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01284 ATGGAAACCACTGTCCATGTTGTTTCATCCCATTGTGCCCCACAATTTTCTGCTATGGAATTTGGGATTCAGAATCTTGGGTGCGCGCACTACAGAAGGAGATGTAAGATCAGAGCGCCTTGTTGTGACGAGGTTTTTTACTGTAGCCATTGCCATAATGAAGCTAAGAACTCTGGTGAAGTTGATGCTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATCTGTTCCTTATGTGACATAGAGCAAGATGTTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTATTTTTGTGATATATGTAGGTTCTTCGATGATGATACTTCAAAGAACCAATACCACTGTGATGAATGCGGCATTTGCAGAACAGGAGGCAGGGATAACTTTTTCCACTGCAAAAGATGTGGATGTTGCTACTCCAAGATAATGGAAAAGGGGCACCGCTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTATCTATTTGATACAGTAAGAGAAATCAGTGTCTTGCCTTGTGCGCATACTATACATTTAGAGTGTGTTAGAGAGATGGAAAACCATCATAGGTACACATGTCCTGTATGCTCAAAATCCATCCGTGATATGTCAAGTTTGTGGACAAAGTTTGACAAAGTGGTTGCCTTAACTCCAATGCTTGAAACCTTAAAAGACAAGATGGTGTGGATTCTTTGCAATGATTGTGGAACGAACTCTCATGTACAATTCCACGTTGTGGCCCATAAGTGCTTAAGTTGCAACTCATACAACACAAGACAGATACAGGGAGTACCTGCTACATCAACCTCATCTGGGGTGACTGAAACGCTTGCTTTCTCTTTAGTTGGCTTTGCGTATTGCTCTTCTTCTGCTTTTTGGGTTACCAACTCCTACAATCAGAACGCATTCAATGTCAAAATCAATGCCACATTCTTGACAATTGACATCAGCTCCAATGCCAAGAGATGGCAAGGAAAAGGAAGGGTGCAAAAGGAAGATATTGTTTCAGGAGTTACAGCAGAATGTGCAATCACTTCATTTCAGAATGCCAGTCCCTCTCTATCCAGCACAATATATTCAAGGAAATGGACCACTGGGACCACATCTGCTCTAGTAGCTGCTCCATTTGCATTGTGTCAATTGTCAAAATAA 1182 0.4196 METTVHVVSSHCAPQFSAMEFGIQNLGCAHYRRRCKIRAPCCDEVFYCSHCHNEAKNSGEVDAVDRHDVPRHEIKKVICSLCDIEQDVQQYCINCGVCMGKYFCDICRFFDDDTSKNQYHCDECGICRTGGRDNFFHCKRCGCCYSKIMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLECVREMENHHRYTCPVCSKSIRDMSSLWTKFDKVVALTPMLETLKDKMVWILCNDCGTNSHVQFHVVAHKCLSCNSYNTRQIQGVPATSTSSGVTETLAFSLVGFAYCSSSAFWVTNSYNQNAFNVKINATFLTIDISSNAKRWQGKGRVQKEDIVSGVTAECAITSFQNASPSLSSTIYSRKWTTGTTSALVAAPFALCQLSK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01284 393 Pfam CHY zinc finger 28 109 IPR008913 GO:0008270
Spst11g01284 393 SUPERFAMILY CHY zinc finger-like 25 99 IPR037274 GO:0008270
Spst11g01284 393 Gene3D - 237 276 - -
Spst11g01284 393 ProSiteProfiles Zinc finger CHY-type profile. 21 97 IPR008913 GO:0008270
Spst11g01284 393 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 272 - -
Spst11g01284 393 SUPERFAMILY RING/U-box 163 211 - -
Spst11g01284 393 SMART ring_2 164 206 IPR001841 -
Spst11g01284 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Spst11g01284 393 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Spst11g01284 393 Pfam Ring finger domain 163 206 IPR001841 -
Spst11g01284 393 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
Spst11g01284 393 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Spst11g01284 393 Pfam Zinc-ribbon 212 269 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01284 Spst-Chr11 37284314 37289300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01284 8 281 C2H2 Transcription Factor Family AT3G18290 38.869 1.49e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01284 K10144 - gmx:100812709 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01284 11 37284314 37289300 Spst11g01284 11 37284314 37289300 ECH