Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01281 ATGGATCTTCATCAAGAGACTCTACTTCACGTTAATGGCTTTGAGCTGCACGACTTTGTTGAAGATCCCAACTTAGATCACTATATCAATTTTATTCGGTTAGAGAAGAAAGATGCTATTTGTGACTTCAATTCTGAGCTTATCAATGAAGCATTCATTGATAATTCTTTCTTGCCACACCCTGCAATCCCATCTGATCAGTGCAATAGTTGTGCAGCGAATGTCTATGATCCAAACTCAACAACTAGCCCCTTCTCTTATTTTGATTGGGCAGCCAAAGGAGGGGGAGAAGAAGAAGAAGATGACATGGAGGATTCATCTGCAACAACAATCACCACAACAACAATCACCACAACACCAACCAAGAGTCTTGTTGCTAAGTCAAGACCAAAAAATGATAGGTCCAAAACTTCGATTTCTGAGAGGAGGAGAAGATACAGAATGAAGGAAAATCTTTATGCATTGAGATCTTTGGTTCCCACCATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCTGTTTCATATACGCATGAGCTTCAAACACAAGCCAGTATGCTTAAGGCTGAGGTTGAAGGACTTGAAACATCCTTATTAGTGTCTAAAAGTTATCAAGGATCAATTGAAAATCTCATGAAGGTTGAATTCACCAATAACAACCTTTCAGTACGCAAGAAGATAATTCAGATAGAGATGTTTCAAGTGGATGTCAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGGGTGGCTGCCTCATTGTACAAATCTCTCGAGTCTCTGACAGGCTTCCATGTTCAGAATTCAAACTTGTCCACAGTGAAAAGCCCTGAGCCAGAAATGAACCTACTCAACCTGAAGCTTTGGGTGTCTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCATTTTTTTAA 927 0.3948 MDLHQETLLHVNGFELHDFVEDPNLDHYINFIRLEKKDAICDFNSELINEAFIDNSFLPHPAIPSDQCNSCAANVYDPNSTTSPFSYFDWAAKGGGEEEEDDMEDSSATTITTTTITTTPTKSLVAKSRPKNDRSKTSISERRRRYRMKENLYALRSLVPTITKMDKASIIGDAVSYTHELQTQASMLKAEVEGLETSLLVSKSYQGSIENLMKVEFTNNNLSVRKKIIQIEMFQVDVKGFYVKIVCNKGEGVAASLYKSLESLTGFHVQNSNLSTVKSPEPEMNLLNLKLWVSEAFVKQGFEFIPFF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01281 308 Pfam Helix-loop-helix DNA-binding domain 134 182 IPR011598 GO:0046983
Spst11g01281 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 207 IPR036638 GO:0046983
Spst11g01281 308 SMART finulus 138 187 IPR011598 GO:0046983
Spst11g01281 308 Gene3D - 125 198 IPR036638 GO:0046983
Spst11g01281 308 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 278 - -
Spst11g01281 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Spst11g01281 308 MobiDBLite consensus disorder prediction 127 142 - -
Spst11g01281 308 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01281 Spst-Chr11 37274434 37275757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01281 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 45.427 3.75e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst11g01281 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01281 K26214 - gmx:100778649 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00498 5 3941678 3943142 Spst11g01281 11 37274434 37275757 PCT