Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01279 ATGGAGATGGAAGGGTTGGATTCTAATTCTAATTCCAATTCTAGTTCTACCCAGAACAACATGGCCAAGGGAAAACGCACCAAAAGGATGAGGCTTTTGTCCCCATCTGGTGTCGTCGTTGTTAGCACCGCCACTACCAATAGCTGCTCCAGTCCTAATTCTGGTGGCTCCTCCACCACCACTTGTGAGAGTGAAGAGGAAGATATGGCAAATTGTTTGATTCTCTTGGCCCAAGGAGGGGATTCTTATCATCATCAGCAGCATCATCGTGATCCTCGTCGGGACAAGCAACAAGTTGAAGATCATGGGCTTGGAAATTGTAACGGTGTCAAGACAGAAAAGGGTAAGAGTGACACTACCACCACCGCAACAACCGCTGTTAACGCCAAAGTTGGTTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACTTTCCCTTCGTTTCAAGCACTTGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTCGTGGCTGAAGACAAAAAACTACCACCCTCTCACTTGCCACACATGGGTGTCACCAACTACGATCGGTTTGAGGAGGATAACGTTAAAACTGGCCCTCCAATTCCCCTTCAACTGGGTCATGGCAACAACAGCAACAACAAGGGTAAGATTCATGAATGTTCCATTTGTGGTTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACACCAACACTGTTGACACATCAAGTTGCAACACCATCACCGCCGTCGCGACCACCACCACCACCACCGTTTCGCCGCCGCGAAACATCCTACAATTGGATCTTAACCTCCCGGCCCCGGAGGATGATATCCGGGAGACTAAGTTTCAATTTCCGGTAACGACTCAGGTGCTGGTCGGTACTCCGGCTTTGGTAGATTGTCATTATTAG 930 0.4839 MEMEGLDSNSNSNSSSTQNNMAKGKRTKRMRLLSPSGVVVVSTATTNSCSSPNSGGSSTTTCESEEEDMANCLILLAQGGDSYHHQQHHRDPRRDKQQVEDHGLGNCNGVKTEKGKSDTTTTATTAVNAKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLVAEDKKLPPSHLPHMGVTNYDRFEEDNVKTGPPIPLQLGHGNNSNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNTNTVDTSSCNTITAVATTTTTTVSPPRNILQLDLNLPAPEDDIRETKFQFPVTTQVLVGTPALVDCHY 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01279 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Spst11g01279 309 SUPERFAMILY beta-beta-alpha zinc fingers 136 236 IPR036236 -
Spst11g01279 309 SMART c2h2final6 136 158 IPR013087 -
Spst11g01279 309 SMART c2h2final6 214 236 IPR013087 -
Spst11g01279 309 PANTHER ZINC FINGER PROTEIN ZAT5 53 291 - -
Spst11g01279 309 MobiDBLite consensus disorder prediction 83 117 - -
Spst11g01279 309 MobiDBLite consensus disorder prediction 1 31 - -
Spst11g01279 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Spst11g01279 309 Gene3D Classic Zinc Finger 133 236 - -
Spst11g01279 309 Pfam C2H2-type zinc finger 136 161 - -
Spst11g01279 309 Pfam C2H2-type zinc finger 214 238 - -
Spst11g01279 309 MobiDBLite consensus disorder prediction 1 23 - -
Spst11g01279 309 MobiDBLite consensus disorder prediction 83 101 - -
Spst11g01279 309 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Spst11g01279 309 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01279 Spst-Chr11 37254791 37255720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01279 16 309 C2H2 Transcription Factor Family AT2G28200 39.308 4.52e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g01279 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01279 - - gmx:100782408 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02850 1 37069961 37070776 Spst11g01279 11 37254791 37255720 ECH
Spst7g01007 7 17847371 17848177 Spst11g01279 11 37254791 37255720 ECH
Spst5g00494 5 3914287 3915228 Spst11g01279 11 37254791 37255720 ECH
Spst11g01279 11 37254791 37255720 Spst11g01279 11 37254791 37255720 ECH
Spst5g00494 5 3914287 3915228 Spst11g01279 11 37254791 37255720 PCT