Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01276 ATGATGCCAAAGGCAGCATCTACCTCCACAAATGATTTTCAAGCACTTCACATGTTTCCTGTGAATGAATATTTGGTTTCATCTTCTGTTGAACTAAGCTCTTCTGCAGCTTCACACTCTTCTACCTCCTTCCTCTTCTATCTTTCTCTTCTGAAGGACAAGCTAGGTCAACTGCAGAACCTGGTTGGTGCTCTTGGCTCCCCTCAACATAACCTACCCGAGTCAACTCCCATGGCAATCTCCACCATTAACGCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAACAAATGACTCTTGGTTCCTCTTCAGGTACTAGTATTTCTAATGAATTGCACCGAAACCAGAATCAGCAACAAATTGTTAATGATAGATTATTATCACCTCATCATCCATCAAACTTTGGCAACAATAATAGGGGTATGCTTAGTATTAGTAACACTAACATGAGCTCGGATGTGATTAGAGGGCAAAGTGATTTCTTATCTAGTATTGAAGGAGAGGCACTGGATTGGCTTGCTGAAAGCTATAATAATAACAATAGTGGAGATTGTAACATTAAGGATGAAGAAGCCAACATCAACATGATGGGAGAGAGTGATATAATCGAATTGGATGCTGCAGATTTGTTGGCAAAGTACTCCTATTTTTGCCAAGTTTGTGGGAAAGGGTTTAAGCGTGATGCCAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAAGTGCAGCCTTGAGAAGCAAGGATAGCTTATTGGGTGGGGGAAGCGTCACCAAGAGATATTCGTGCCCTCAAGAAGGGTGCAGGTGGAACCAAAAGCATACCAAGTTCCAACCCTTGAAGTCAATGATTTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCAGAAACAGTTTTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACAACTTTTTCTAGGAAAGACAAGCTTATGGGCCACGTTACTTTGTTCGTGGGGCACACCCCAGCTATTCATGGTTTGTCAAGATGTGTTTGA 1116 0.4346 MMPKAASTSTNDFQALHMFPVNEYLVSSSVELSSSAASHSSTSFLFYLSLLKDKLGQLQNLVGALGSPQHNLPESTPMAISTINATLQEIIVAATSMRFTCQQMTLGSSSGTSISNELHRNQNQQQIVNDRLLSPHHPSNFGNNNRGMLSISNTNMSSDVIRGQSDFLSSIEGEALDWLAESYNNNNSGDCNIKDEEANINMMGESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALRSKDSLLGGGSVTKRYSCPQEGCRWNQKHTKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVTLFVGHTPAIHGLSRCV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01276 371 Gene3D Classic Zinc Finger 306 356 - -
Spst11g01276 371 Gene3D Classic Zinc Finger 218 246 - -
Spst11g01276 371 SUPERFAMILY beta-beta-alpha zinc fingers 220 247 IPR036236 -
Spst11g01276 371 SMART c2h2final6 308 330 IPR013087 -
Spst11g01276 371 SMART c2h2final6 222 244 IPR013087 -
Spst11g01276 371 SMART c2h2final6 270 303 IPR013087 -
Spst11g01276 371 FunFam Zinc finger protein 574 221 245 - -
Spst11g01276 371 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 364 IPR044300 GO:0010044|GO:0010447
Spst11g01276 371 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Spst11g01276 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 249 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01276 Spst-Chr11 37239700 37240815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01276 41 369 C2H2 Transcription Factor Family AT5G22890 51.632 8.45e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g01276 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01276 - - vum:124833786 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00493 5 3905606 3906865 Spst11g01276 11 37239700 37240815 PCT