Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01271 ATGGCGAACGATACAGATTCAACACACTTTGTGGAGTTCTCTAGAGTTCGCACAGGGTTGAAAAGGGAGTTCACCTTTGCTATGAAGGTACAATCTGAAATTTGTGGTTCTTTAGGCCGAACAAGATCCAATAGTTTGTCTCGCAAGAGATCCAAAAAGTCTAGTCTCTTTGAATCAAAGAGGAAAAATCTCACAGGCCTCACAAGTTTAGTTAAATCCGAGGATGATATTGGAGATGTTCTAAGCAAGGAGGAAGCAAAGAGTGATGTAATGAATGCAGAGAAACCCAAGTGTCAAGTGGGTGGTGATGAAGGAACAATATCTGTTGTTTGTGAAAAGGTGCATGAGAGTGTTGAATCCATAATTCAAGTGAGGAATGAAGATGAAATGGTTATTCCTTTTAAAAAAGAGAATAATAATTATGAACCTAAGATTGAGATGGAACAAATAAAAATGGTTTGTGATAACGGTGGGGTCAAGGAAGAAGTTGTCAGTGATAAGGTTCCATCGATGTTGGGTTGCGAGCTGAAATCCCCAAAAATAGTTATGCTGTCAACTATGAATAAGGTTGAAAATGGTGATAATAAGGTTAAAAGTAATAATGTTGAGAAAGAAGGCAAAAATGTTGTTGCTTCAGCTTCGAGGAAAATATCTATGTGTTCTGGGGGAAAAAAATTTCCTTTGAAACTAAAAGACCTTTTATCATCTGGGATTCTTGAAGGATTACTTGTAAAATATGTTCGTGGTATCAAGGCAAAATCTACAGGGCTCTTGGGTGTCATTTCTGGCGTTGGTATTTTATGTTATTGTGAAATTTGTAACAAAGTTGAGGTTGTAACGCCCACAATTTTTGAGTTACATGCTGGTAGTGCAAACAAGCGCCCTCCAGAGTATATTTTTCTTGAGAATGGACATACTCTTCGTGATATCATGAATACATTTTTGCATATTCCATTAGACAAGTTGGAGGAAGTTGTGCAGAAAATGCTTGGAGGCTTCACAATGAGAAAATCTATGTTCTCAAAATCAATTGCGCTTTCAACATCGTTAAATCGTGGAATGAAACACAACACATCTAATGGTAAAAGTCAAGGAAAACTAACTAGGAAGGATTTACGCTTGCATAAGTTGGTCTTTGAGGAAGATGGGTTGCCTGATGGAACTCAAGTAGCATACCATATTCATGGAAAGGTTAGTCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCACGACGAAAGCCATATGTGCACATATTAATATCTAATGGACTCTCACTCCACGAGTTGTCCATCTCCTTGTCAAAAGGTCGCAAGGTTTCTACTAGTGATAATGATGATCTCTGCAGTATATGTAGAGATGGAGGAAATCTTTTATGTTGTGACGGATGCCCTAGAGCTTTTCACATAGGTGAAATTTTACTTTTTACATCATAA 1437 0.3779 MANDTDSTHFVEFSRVRTGLKREFTFAMKVQSEICGSLGRTRSNSLSRKRSKKSSLFESKRKNLTGLTSLVKSEDDIGDVLSKEEAKSDVMNAEKPKCQVGGDEGTISVVCEKVHESVESIIQVRNEDEMVIPFKKENNNYEPKIEMEQIKMVCDNGGVKEEVVSDKVPSMLGCELKSPKIVMLSTMNKVENGDNKVKSNNVEKEGKNVVASASRKISMCSGGKKFPLKLKDLLSSGILEGLLVKYVRGIKAKSTGLLGVISGVGILCYCEICNKVEVVTPTIFELHAGSANKRPPEYIFLENGHTLRDIMNTFLHIPLDKLEEVVQKMLGGFTMRKSMFSKSIALSTSLNRGMKHNTSNGKSQGKLTRKDLRLHKLVFEEDGLPDGTQVAYHIHGKVSPSQFEAHAGWASRRKPYVHILISNGLSLHELSISLSKGRKVSTSDNDDLCSICRDGGNLLCCDGCPRAFHIGEILLFTS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01271 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 474 IPR013083 -
Spst11g01271 478 SUPERFAMILY FYVE/PHD zinc finger 441 470 IPR011011 -
Spst11g01271 478 Pfam Tify domain binding domain 259 312 IPR032308 -
Spst11g01271 478 Pfam Tify domain binding domain 397 430 IPR032308 -
Spst11g01271 478 PANTHER AUTOIMMUNE REGULATOR 46 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01271 Spst-Chr11 37201931 37205414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01271 366 470 PHD Transcription Factor Family AT2G36720 56.000 1.60e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01271 - - aprc:113859749 436.417