Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01268 ATGGAATTCTCTTACCGCAGATTGCTGCTACAGAACGAGGACGTTCCAATCTCCACGTCCATCCCTCCTCTCCCTCAAGCCAAACACGCCACAAACGCGTCCTCGCCGCCAGAGTCCTTCGGAAGCCCTCTGGCAGTGTCCATTCGTCCGGTGTTCACATCGAGCGTGGCCTACGTTTTCCTCATCCTCTTCACCACCTTCTTCTTCATCGGATTCGTGTTTCTCTACTTCCAGCAAAACTCCTCCACGTCCTCCTCCTCCGAGAGGGGCGACATCCGCCGCCGCGTGCCACAGAGATCGGCGGAGGAGTCAGGCGCTGGGAAGTCGGTGGCGGTGGTGGCGCAGGAGTCGAGGGAGGGGGAGTGCGCGATATGTCTGGAGGAGGTGGGAGAGGGGGAGGTGGTGAAGATGATTGCGTACTGCAGGCACGTGTTCCACGGAGAGTGCATTGACACGTGGCTGGAGAAGCACGTGACCTGCCCCGTGTGCCGGTGCTGCTGCGAGAACTGTGGAGAGGTGGAGTCGGTGACAGTGAGAGGAGGAGGAGCAGAAGAAGAAGGAGAAGTGGTTTCCGTAACAAACTTGGATTAG 591 0.5871 MEFSYRRLLLQNEDVPISTSIPPLPQAKHATNASSPPESFGSPLAVSIRPVFTSSVAYVFLILFTTFFFIGFVFLYFQQNSSTSSSSERGDIRRRVPQRSAEESGAGKSVAVVAQESREGECAICLEEVGEGEVVKMIAYCRHVFHGECIDTWLEKHVTCPVCRCCCENCGEVESVTVRGGGAEEEGEVVSVTNLD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01268 196 PANTHER RING FINGER DOMAIN-CONTAINING 24 167 - -
Spst11g01268 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 169 IPR013083 -
Spst11g01268 196 Pfam Ring finger domain 121 164 IPR001841 -
Spst11g01268 196 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Spst11g01268 196 MobiDBLite consensus disorder prediction 82 103 - -
Spst11g01268 196 SUPERFAMILY RING/U-box 115 168 - -
Spst11g01268 196 CDD RING-H2_PA-TM-RING 121 164 - -
Spst11g01268 196 SMART ring_2 122 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01268 Spst-Chr11 37162670 37163260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01268 52 192 Rapid Response to Elicitors AT3G05200 36.076 3.78e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01268 - - var:108339852 270.011