Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01255 ATGTCTCGTCGTGGTGGTTCTAAGCAATCTGATCCGCCGCACTCTTCCGCTCCTTCTCCGTCTGGCAGAGCCCGAGGCCGTGGACGTGGTCGCGGTCGAACAGAACACTTCGCTCCTTCTCCGGCTCCGACCGCCGCTCCTCTCCCCTCGGCGGCCCCAATCCCTACATTGGGGGCGCAGGTTCCATCCCAGCCTGTTCAAGTCTCGTCGGCGCCAGTTCCTGAATCTCAACCGGTAGCATCGCTTGCATCAACATTCGAGAAACAATTGACAGTGATGCCGTCGTCGTCGAAGGCTGTTAGGTTCCCGGACCGGCCGGGATTTGGACGAGCGGGAAAGAAAATCCGAGTGCGAGCAAATCATTTTCAAGTGCAAGTGGCGCAGCAAGATCTCTATCACTACGATGTTAGTAAAGTGTATCGCACTCGTGTGGCTATCACTCCCGAGATTCCTTCGAAGAAGGTTTCTAGAGATGTTATTGGCCTACTGGTTCAAGCACACCGTGAATCGATGTTAGGAAATCGCATTCCTGCTTACGATGGGCGAAAAAGTCTTTATACCGCCGGACCTTTGCCTTTTGAATCGAAGGATTTTAAGGTCAAATTGGGGGATGACGATGAACTAGGACCAGGGTCAACTTCTTCTCCTCTCATTCCTGCTAGGAAAAAGCGTGAACGGGAGTTTAGAGTCACAATCCGATTTGCTGCAAAGACTGATCTTAATCACCTTAGTCAGTTTCTTAATCGCCGCCAATTGGACTGTCCTCAAGAAACTATTCAGGCTCTTGATGTTGTTCTGCGGGCTGCACCTTCTGAAAGGTTTGATGTGGTGGGGAGATCATTTTTTTCGCCTAAGTTGGGACCTAAAGGAACGTTGGGTAGTGGGACTGAATATTGGCGGGGATACTACCAGAGTCTTCGCCCAACTCAGATGGGCATGTCTCTTAATATTGACGTGTCAGCGAGAGCATTTTATGAGGCAATTCCTGTCCTTGAATTCATTTCGAAACATTTTAGACTCAATCTTGATAGGCCTTTGCATGATCAGGACCGAATTAAGATTAAGAAAGCTTTGAGAGGAGTTAAGGTACAAGTTAGTCATGGACTGAACATAAGACGACACAAAGTTACTGGAGTGACAACAGAACCTCTTAGAAACTTAATGTTTACGCTTGATGACAATAGAGCACGAACTTCCGTTGTTCAGTATTTCCAAGAGAAATATAATATTTCTCTGCGGTATACACAGCTTCCTGCTCTTCAAGCGGGTAGCGACACTAAGCCAATTTTTTTGCCTCTGGAGATTTGTCAAATTGTGGCTGGGCAGAGATATACCAAAAAATTAAATGAGGATCAAGTAACTGCTCTTTTAAGGGCAACTTGTCAGCGTCCTCGTGACAGAGAAATCTCTATCACACAGATTGTGAGGCAGAGCAATTTCAGAACAGACAAGTTTGCGAAGCAATTTCAAATTCAAGTCAGGGAGGATCCTGCAGTGCTCGAAGCCCGTGTTTTACCTCCCCCAATGCTTAAATACCATGGAGCAGGTGGTGAATCTCAAGTTGAACCTAGAATGGGTCAATGGAATATGATTAATAAGAAAATGATTAGGGGTGGCACTGTTGAATATTGGACATGTCTGAACTTATCTGCACGAATACACAGAGATGCGCCAGGTGACTTTTGTCACCAGTTGGCTGAAATGTGTAACAGCAAGGGAATGCGTTTTAAACCAAGCCCTTTAGTGCCTATAACAACATCTCAAAGTGGTCAAATAGAGAATGCTCTTATGAACGTTCATAGGAAGTGCCAAGGGACACTCCAATTGTTGATTATAATTTTACCTGATGTCAAGGGGTTTTATGAGAGGATAAAGCGCATATGTGAAACTGAATTAGGAATAGTATCTCAATGTTGTCGGCCTAACCAAGTTATGAAGATGAACAAGCAATATCTTGAGAATCTGGCCCTCAAGATAAATGTGAAGGTTGGTGGTACAAACACGATATTGAATGATGCATTTGTGCATAAAATCCCTCATGTGTCCGATAAACCAACAATAATTTTGGGAGCGGATGTAACACATCCACAACCAGGGGAGGATACTAGTCCTTCTATTGCTGCAGTAGTGGCATCAATGGATTGGCCTTATGTAACAAAGTATAGAGGGGTTGTCTCTGCTCAAAAACACCGAGAAGAGATTATTCAAGATCTTTATACTTCACATTCAGATCCTGTTAAGGGACTTGTGCATTCAGGAAGTATCAGGGATTTATTTCGTGCTTTCCGGAATTCAACTGGACAAAAGCCACACAGGATTATATTCTACAGAGATGGCGTGAGTGAGGGCCAATTCAATCAAGTATTGCTTTATGAGATGGATGCAATAAGAAAGGCTTGTAGCTCGCTGGAAGATGGCTATTTACCTCCTGTTACTTTTGTGGTGGTCCAGAAAAGGCACCACACCCGGTTGTTCCCTGAAGATCACGGAAGTCGAGATCAGACAGATAGAAGTGGAAATATATTACCAGGAACTGTTGTTGACACAACGATCTGTCATCCTCGAGAGTTTGATTTTTACCTCAATAGTCATGCCGGAATTCAAGGAACCAGTCGTCCAACTCATTATCATGTATTGTACGATGAAAATAAATTTACTGCTGATGAGTTACAGATTTTTACAAATAATTTGTGTTATACGTATGCAAGGTGTACTCGATCTGTTTCAATAGTCCCTCCCGCATATTACGCCCATCTGGCAGCATTTCGAGCTCGCTGCTATATTGATAAAGATATATCAGATGCTGGTTCTGCAACTGGAGGCAAAGATGGTGGCACGCACTTTGAGGTGAAATTGCCATCGGTCAAGGGTAATGTCCAAGACGTGATGTTTTTCTGTTGA 2901 0.4436 MSRRGGSKQSDPPHSSAPSPSGRARGRGRGRGRTEHFAPSPAPTAAPLPSAAPIPTLGAQVPSQPVQVSSAPVPESQPVASLASTFEKQLTVMPSSSKAVRFPDRPGFGRAGKKIRVRANHFQVQVAQQDLYHYDVSKVYRTRVAITPEIPSKKVSRDVIGLLVQAHRESMLGNRIPAYDGRKSLYTAGPLPFESKDFKVKLGDDDELGPGSTSSPLIPARKKREREFRVTIRFAAKTDLNHLSQFLNRRQLDCPQETIQALDVVLRAAPSERFDVVGRSFFSPKLGPKGTLGSGTEYWRGYYQSLRPTQMGMSLNIDVSARAFYEAIPVLEFISKHFRLNLDRPLHDQDRIKIKKALRGVKVQVSHGLNIRRHKVTGVTTEPLRNLMFTLDDNRARTSVVQYFQEKYNISLRYTQLPALQAGSDTKPIFLPLEICQIVAGQRYTKKLNEDQVTALLRATCQRPRDREISITQIVRQSNFRTDKFAKQFQIQVREDPAVLEARVLPPPMLKYHGAGGESQVEPRMGQWNMINKKMIRGGTVEYWTCLNLSARIHRDAPGDFCHQLAEMCNSKGMRFKPSPLVPITTSQSGQIENALMNVHRKCQGTLQLLIIILPDVKGFYERIKRICETELGIVSQCCRPNQVMKMNKQYLENLALKINVKVGGTNTILNDAFVHKIPHVSDKPTIILGADVTHPQPGEDTSPSIAAVVASMDWPYVTKYRGVVSAQKHREEIIQDLYTSHSDPVKGLVHSGSIRDLFRAFRNSTGQKPHRIIFYRDGVSEGQFNQVLLYEMDAIRKACSSLEDGYLPPVTFVVVQKRHHTRLFPEDHGSRDQTDRSGNILPGTVVDTTICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADELQIFTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARCYIDKDISDAGSATGGKDGGTHFEVKLPSVKGNVQDVMFFC 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01255 966 SUPERFAMILY Ribonuclease H-like 605 929 IPR012337 -
Spst11g01255 966 CDD Piwi_ago-like 484 928 IPR045246 -
Spst11g01255 966 SMART DUF1785_2 275 327 IPR014811 -
Spst11g01255 966 MobiDBLite consensus disorder prediction 1 17 - -
Spst11g01255 966 Pfam Mid domain of argonaute 523 601 IPR032473 -
Spst11g01255 966 CDD PAZ_argonaute_like 327 439 - -
Spst11g01255 966 ProSiteProfiles Piwi domain profile. 609 929 IPR003165 GO:0003676
Spst11g01255 966 Pfam Piwi domain 611 928 IPR003165 GO:0003676
Spst11g01255 966 Pfam PAZ domain 353 456 IPR003100 GO:0005515
Spst11g01255 966 Gene3D - 504 672 - -
Spst11g01255 966 MobiDBLite consensus disorder prediction 1 73 - -
Spst11g01255 966 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 93 931 - -
Spst11g01255 966 Pfam N-terminal domain of argonaute 113 266 IPR032474 -
Spst11g01255 966 SMART PAZ_2_a_3 328 456 IPR003100 GO:0005515
Spst11g01255 966 Gene3D - 678 966 IPR036397 GO:0003676
Spst11g01255 966 Pfam Argonaute linker 1 domain 277 326 IPR014811 -
Spst11g01255 966 Gene3D paz domain 322 444 - -
Spst11g01255 966 SUPERFAMILY PAZ domain 323 480 IPR036085 GO:0005515
Spst11g01255 966 ProSiteProfiles PAZ domain profile. 328 440 IPR003100 GO:0005515
Spst11g01255 966 FunFam Argonaute 10 504 671 - -
Spst11g01255 966 FunFam protein argonaute 10-like 677 966 - -
Spst11g01255 966 Pfam Argonaute linker 2 domain 466 512 IPR032472 -
Spst11g01255 966 SMART Piwi_a_2 609 929 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01255 Spst-Chr11 37010423 37016173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01255 52 966 Eukaryotic Initiation Factors Gene Family AT1G48410 55.836 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01255 K11593 - gmx:100799033 1387.47