Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01253 ATGGAGAGGAACGAAAATTACAGTTCAGAGGAGGAATGCATGGAGGATTATAGGCGTGGGGGATACCATGCCGTTCGAATTGGCGACGCTTTCAACAATGGCCGCTACGTCGTGCAGTCCAAACTCGGTTGGGGCCACTTTTCTACCGTTTGGCTGGCCTGGGACACTCTCAATTCGCGTTTTGTAGCCCTTAAAATTCAGAAGAGTGCGCAACATTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAATAGCTGAGGGGGACCTGGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTTGGGGCCAAATGGACAGCATGTTTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTCACCCTTATAAAATATACTGATTATCGCGGGGTTCCTCTCCACATGGTTAAAGAAATATGTTTTCATATTTTGGTGGGCTTAGATTACTTGCATCGTGAGCTTTCTGTTATACACACTGATTTGAAGCCAGAAAATGTGTTGCTTCTGTCACTGATAAATCCATCTAAAGATCCTAGGAAATCAGGTGCTCCACTCGTCCTTCTGAATACCAGGGATAAGACTGCGTCTAATAATGGGACTCACCAAGACAATAAAATTCTGAATGGAGATCCACTGAAGAACCAGAAAAAGAAAATGCAGAGGAAGGCTAAGGTAGCTCAAGGCTTTGTTGGGAAGGAAACTTCAGAGGAAGCTGATGATTATAAAGGACCTGAGCATGAAGATTGTGGCAATGATGTAAAATCAAGTGTAGAATCTATTGAAGATAAACCTGATAGTTCTTTGAGTAAAGATGAATCAACAAAGACTTTTGAAAAGGATGTTTCACAAGGAAGTCATAAGAGTGGCAGCCGTTCCATGAAAAAGAAGTTGCTGGCAGCTGTTGATCTTAGGTGCAAGCTGGTTGATTTTGGTAGTGCTTGTTGGACTTACAAACAATTCACAAATGATATTCAGACAAGGCAATATCGGTGTCCTGAGGTTCTTCTTGGATTCAAATACTCAACCCCAGCAGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCCCACAGTGGTGACAACTATGATAGAGATGAGGACCATCTGGCATTGATGATGGAGCTTGTTGGGAAGATGCCTCCGAAGATTGCACTTGGTGGCCGCTATTCTCGAGAATTTTTCAATAGACATGGTGACTTACGGCACATCAGCAATTTAAGATTCTGGCCAATGGATAAGGTGCTGATGGACAAGTATAATTTCAGTGAGCAAGACACAAAGGACATGGTTGACTTCCTTGTTCCAATACTTGATTTCGTCCCAGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGCCATCCATGGATGAGTGCAGGTCCTCGTACTCTTCAGCCCTCAATAACTACTGTTAAATCTGATGCCATCAATGAGGAAATGTCTGAAAGAAGGAAGAGGGAAGCTTCTGAGGAAGAGGCAGTGGAAATTGGTTTGAGGAATATAGCCATTAAAGGAACTTCTGAGCTCCTAAAAGACTCCCAACCTCTAAAACCATCCAAATAG 1608 0.4248 MERNENYSSEEECMEDYRRGGYHAVRIGDAFNNGRYVVQSKLGWGHFSTVWLAWDTLNSRFVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHLGPNGQHVCMVFEFLGDNLLTLIKYTDYRGVPLHMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLINPSKDPRKSGAPLVLLNTRDKTASNNGTHQDNKILNGDPLKNQKKKMQRKAKVAQGFVGKETSEEADDYKGPEHEDCGNDVKSSVESIEDKPDSSLSKDESTKTFEKDVSQGSHKSGSRSMKKKLLAAVDLRCKLVDFGSACWTYKQFTNDIQTRQYRCPEVLLGFKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELVGKMPPKIALGGRYSREFFNRHGDLRHISNLRFWPMDKVLMDKYNFSEQDTKDMVDFLVPILDFVPEKRPTAAQCLSHPWMSAGPRTLQPSITTVKSDAINEEMSERRKREASEEEAVEIGLRNIAIKGTSELLKDSQPLKPSK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01253 535 Gene3D Transferase(Phosphotransferase) domain 1 119 473 - -
Spst11g01253 535 MobiDBLite consensus disorder prediction 198 296 - -
Spst11g01253 535 MobiDBLite consensus disorder prediction 198 216 - -
Spst11g01253 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Spst11g01253 535 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Spst11g01253 535 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 7 493 - -
Spst11g01253 535 Pfam Protein kinase domain 36 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g01253 535 Pfam Protein kinase domain 309 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g01253 535 SUPERFAMILY Protein kinase-like (PK-like) 32 481 IPR011009 -
Spst11g01253 535 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Spst11g01253 535 FunFam CMGC/SRPK protein kinase 22 121 - -
Spst11g01253 535 FunFam Serine/threonine-protein kinase SRPK-like protein 302 472 - -
Spst11g01253 535 MobiDBLite consensus disorder prediction 240 292 - -
Spst11g01253 535 CDD STKc_SRPK 25 472 - -
Spst11g01253 535 SMART serkin_6 36 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst11g01253 535 ProSiteProfiles Protein kinase domain profile. 36 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01253 Spst-Chr11 36976180 36979930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01253 6 521 EF-hand Containing Proteins AT5G22840 66.284 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Spst11g01253 Pkinase 5.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01253 K08832 - gmx:100790060 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00482 5 3823328 3826752 Spst11g01253 11 36976180 36979930 PCT