Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01244 ATGGAGCAACAGAATCTTTTGGACACTGATCAGTTTTTGACTCTGGGCCCCACATCTGACGAGCCACACAGTCCTAAGGAAGGAGGTACGCATGTCAACGCCGCCGCCGATAGCAACAACAACGACAAAGATGTTGTTAGCGCAGTTAATGTTGGAATTGGTCCTGGTTCTGGTTCGGAGCTTGTTGTGGCCGTAGAAAATTCCGAGGCTGCTGCAGGTTCGGGAGTGGTGGTGAAGAGAGGAAGGGGAAGGCCTCGGAAGCACGAGGCGGTCGGGAGCATGGTGTCTCCCTTGGCGGCGGTGGTGCAGCTGCCGGGATTTTCTGATCAGATCAAGAGAGGCAGGGGACGCCCTCGTGGCTCTGGGAAACTGCAGGTTATAGCTTCCATTGGTGGGTTTATGGCAGAAACAGCTGGGGGAAGCTTCATACCTCACGTGCTGACAGTGCAAGTTGGAGAGAATTTGGTAGGCACAATAATGTCATTTTTTGAGAAAGGCCCTCTATCAGTTTGCTTACTTTCTGCTACTGGTGCTGTTTCAAATGTGACCATTCGCCAACATGCTGGTTCTAATCATATCATGAGATTTGAGGGTACCTTTGAGATATTGTCTTTATCAGGAGCTTGTACCTACGTTAGTGGCACTAATGGTCCAGTTCGTAGAAGTGGATCATTAAGCATTTCAATGGCTAAACCTGATGGGAATGTTTTGGGAGGTGTCCTTGAGAGTGCATTGGTAGCAGCTTGCCCTATTCAACTTGTTATGGCCACTTTCAAGCAAAACACCAATAGCCAACTGAAGAGAAAACAATTGTTTGAATCTTGTGATGTCCCCCTTATGCTGGAAAGTTCAGATTCAGAAAGGGGTAAAATGAAAGTTGCAAAGTGGACAGAAAGTGAGAAGAGTTGTCCATCACCACCACCAACAGGACTTGAACCAACAACAAAAACTAATTGCATAGCAGATAGTGTCATTACTCCACACAGTATGCACTCTGCATGTGTTATTGGTGCTGATATGGACAATCAGGCCCCGCAGTCCGCATCAGATGATTCAGACCAAAAGAATTCTGCAGATGTGAATGCAAGTGCTATAGATCTGTAA 1104 0.471 MEQQNLLDTDQFLTLGPTSDEPHSPKEGGTHVNAAADSNNNDKDVVSAVNVGIGPGSGSELVVAVENSEAAAGSGVVVKRGRGRPRKHEAVGSMVSPLAAVVQLPGFSDQIKRGRGRPRGSGKLQVIASIGGFMAETAGGSFIPHVLTVQVGENLVGTIMSFFEKGPLSVCLLSATGAVSNVTIRQHAGSNHIMRFEGTFEILSLSGACTYVSGTNGPVRRSGSLSISMAKPDGNVLGGVLESALVAACPIQLVMATFKQNTNSQLKRKQLFESCDVPLMLESSDSERGKMKVAKWTESEKSCPSPPPTGLEPTTKTNCIADSVITPHSMHSACVIGADMDNQAPQSASDDSDQKNSADVNASAIDL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01244 367 MobiDBLite consensus disorder prediction 337 367 - -
Spst11g01244 367 Gene3D - 144 277 - -
Spst11g01244 367 MobiDBLite consensus disorder prediction 1 41 - -
Spst11g01244 367 MobiDBLite consensus disorder prediction 295 315 - -
Spst11g01244 367 PRINTS AT-hook-like domain signature 79 89 IPR017956 GO:0003677
Spst11g01244 367 PRINTS AT-hook-like domain signature 110 121 IPR017956 GO:0003677
Spst11g01244 367 SMART AT_hook_2 112 124 IPR017956 GO:0003677
Spst11g01244 367 SMART AT_hook_2 79 91 IPR017956 GO:0003677
Spst11g01244 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 259 IPR005175 -
Spst11g01244 367 ProSiteProfiles PPC domain profile profile. 139 278 IPR005175 -
Spst11g01244 367 MobiDBLite consensus disorder prediction 342 361 - -
Spst11g01244 367 MobiDBLite consensus disorder prediction 1 18 - -
Spst11g01244 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 266 - -
Spst11g01244 367 CDD DUF296 144 258 IPR005175 -
Spst11g01244 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 342 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01244 Spst-Chr11 36871275 36875247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01244 78 258 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 44.324 6.59e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01244 - - gsj:114378162 417.157