Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01241 ATGGAGTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAACTGTGAAGGTTGATCCAATGGATCCAGTTGGGGCATATATTCACATTTCTCAGGTTGCCCTTGGAGAGTCGAAAAAGGAGAAGGCAAATGAACCTGTAGTTCTGTACTTGAAAGTTGGTGACAAGAAGATTGTGCTAGGAACCCTTAAAAGGGATGACATTCCTCACCTTTCGTTGGATTTAGTTTTGGACTCTGACTCTGAGCTTTCTCACAGTTCTAAAAGTGCTACTGTCTTCTTTTGTGGATACAAAGTTCTAACTGACGAGGGTAACATGTCCGATTTTTCTGATAGTGAAGAAGAAGAGGATGAACCTGTGTTGAATGCTAAAGAAAATGGGAAACCTGAAATAAAAGCTGAAGATGCGAAGGTTACCAAGCCCTCTAAACCTGTTTCTGTGACAGCTGCGTCAGCAAAACTAGTTAAGACTGAACCAACGAAAGAAGAGGAAGATGATTCTGATTCTGACGAATCTGATGATGAGATTGGTGGTGATGATGAATCTGGAAGTTCTGATGAGATGGATGAAGATAGTGACGGTGATGAGGAGAGTGATGAAGAACATGAAGAGACCCCTGTGAAGAAGGTGGTTCAGGGCAAGAAGAGACCAAATGAGTCTGCATCAAAAACTCCTGTTTCTTCCAAGAAATCTAAAACTGCTACTCCTGAAAAGACCGGCTGGGCAAATTGGGGGTTTCCTATTACATGCTCAAATGTTAAGAAAAATGTACATGTAGCAACTCCATATCCTACGAAGAAAGTTGGAAAAACTCCCAATAATGCTACTAAGGGCCAATCTCCCAAATCTACTGGACAACTAACTTGCGGAAGTTGTAAAAAGTCTTTCATTAACGAAGCTGGTCTGCAACAACATAAGAAGGCTAAGCATGGTGGTCAGTGA 948 0.4198 MESPMEFWGVEVKVGQTVKVDPMDPVGAYIHISQVALGESKKEKANEPVVLYLKVGDKKIVLGTLKRDDIPHLSLDLVLDSDSELSHSSKSATVFFCGYKVLTDEGNMSDFSDSEEEEDEPVLNAKENGKPEIKAEDAKVTKPSKPVSVTAASAKLVKTEPTKEEEDDSDSDESDDEIGGDDESGSSDEMDEDSDGDEESDEEHEETPVKKVVQGKKRPNESASKTPVSSKKSKTATPEKTGWANWGFPITCSNVKKNVHVATPYPTKKVGKTPNNATKGQSPKSTGQLTCGSCKKSFINEAGLQQHKKAKHGGQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01241 315 ProSitePatterns Zinc finger C2H2 type domain signature. 291 312 IPR013087 -
Spst11g01241 315 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Spst11g01241 315 MobiDBLite consensus disorder prediction 204 218 - -
Spst11g01241 315 MobiDBLite consensus disorder prediction 165 203 - -
Spst11g01241 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 315 IPR013087 -
Spst11g01241 315 MobiDBLite consensus disorder prediction 123 141 - -
Spst11g01241 315 FunFam Histone deacetylase HDT1 5 105 - -
Spst11g01241 315 Gene3D Nucleoplasmin core domain 2 107 - -
Spst11g01241 315 MobiDBLite consensus disorder prediction 108 247 - -
Spst11g01241 315 MobiDBLite consensus disorder prediction 269 290 - -
Spst11g01241 315 MobiDBLite consensus disorder prediction 219 240 - -
Spst11g01241 315 MobiDBLite consensus disorder prediction 265 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01241 Spst-Chr11 36805039 36807737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01241 5 312 C2H2 Transcription Factor Family AT5G03740 33.861 8.82e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g01241 NPL 6.7e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01241 - - gmx:547649 344.739