Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01228 ATGGCCCTTGAGAATAACGAATCTCCTCATTCCACTTCACTATCTCCACCAAACCCTAATCCGCAACCCACGAATGCGAATCCGTCTCACAAGAGGAAAGCAGGTAGAAAGAAATTTAGGGAGACACGGCACCCAGTGTATAGGGGTGTACGCCAGAGAAACGGAAACAAATGGGTGTGTGAAATTAGGGAACCAATAAAGAAATCAAGGATTTGGGTAGGCACATACTCTACACCTGAAATGGCTGCTAGGGCACATGACGTGGCTGTCTTAGCCCTTAATGGCATTTCTGCAAAGTTCAATTTCCCGGATTCAGTTTCCCTTCTCCCCCTTGCCAAGTCTTGTTCTGCTGTAGATATAAGGCAAGCAGCAAAAGCTGCTACTATTGATGGTGCTTTCACACCAAACACTGTTTTTTCTTCTTCTTCTGATGGTAATGGGAATGCTGAAGACACTTGTTTGAACATCAGTAAGCTGCACTATAATGAATCTGAAACAGTGTTCTTTGATGAGGAGGCACTGTATAACATGCCAGGTCTGTTGGATAGCATGGCAGAGGGATTGCTTATTACCCCGCCCTCTACCAACATAGCACTGGATTGGGACAATATTGGTTCTGAAATAGACCTTTCTCTGTGGACTAACTAA 648 0.446 MALENNESPHSTSLSPPNPNPQPTNANPSHKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEIREPIKKSRIWVGTYSTPEMAARAHDVAVLALNGISAKFNFPDSVSLLPLAKSCSAVDIRQAAKAATIDGAFTPNTVFSSSSDGNGNAEDTCLNISKLHYNESETVFFDEEALYNMPGLLDSMAEGLLITPPSTNIALDWDNIGSEIDLSLWTN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01228 215 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Spst11g01228 215 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Spst11g01228 215 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Spst11g01228 215 MobiDBLite consensus disorder prediction 1 48 - -
Spst11g01228 215 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Spst11g01228 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 214 IPR045277 GO:0003700
Spst11g01228 215 MobiDBLite consensus disorder prediction 30 44 - -
Spst11g01228 215 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Spst11g01228 215 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Spst11g01228 215 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Spst11g01228 215 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Spst11g01228 215 FunFam Ethylene-responsive transcription factor 2 45 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01228 Spst-Chr11 36671477 36672124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01228 12 214 AP2-EREBP Transcription Factor Family AT4G25490 46.798 5.52e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst11g01228 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01228 - - gmx:100793751 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01228 11 36671477 36672124 Spst11g01228 11 36671477 36672124 ECH
Spst5g00620 5 5310246 5310977 Spst11g01228 11 36671477 36672124 PCT