Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01227 ATGGCGACAGAGAGCACAGTAACTTCAAACTCCACCAATGGTGAACGACCGAAGGTAGTTGTCATAACGGGCCCCACCGCTTCCGGGAAGTCGAAGCTTGCCGTTGATTTGGCCTCTCACTTCCCCATCGAAGTCATCAACGCGGATTCCATGCAGGTCTACCGTGGCCTCGATGTTCTCGCCAACAAACTCCCTCTCTCTCAACAGAACGGAGTTCCACATCATCTATTGGGCACTATAAGCCCCAATGTGGAATTCACCGCTAAAGCGTTTCGGGATTCCGCTATTCCTATTATTCATGACATATTGGCTCGTAATCACGTACCTGTTATAGTTGGGGGTACGAATTATTATATCCAGGCTCTTGTGAGTTCGTTTCTTCTAGATGATTCTGCAGAAGATATGGATGAAAGCTGTTTGGGTGATCCACCTGGCATCACGCAGTCTGAGAACAGTTTCCTTGCTGAAAATGATGGTTCAAGCCAGGGTTATGATCTCCTCAAGGATATTGATCCAGTTGCAGCTAATAGAATCCATCCAAATAACCATAGAAAGATAAAGCAATATATTAGTTTGTATACTCGCACTGGTGTTCTTCCAAGTAAAGTTTTTCAAGGGAAGGCAGCAGAGAATTGGGGTCAAGTTGACAACTTAAGATATGACTGTTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGACATGTAGAGCAGAGGGTAGATTGCATGATGGATGATGGATTACTCAATGAAGTGTATGACATTTATAATTTGAATGCTGATTATACTAGAGGTTTGCGACAGGCTATTGGTGTCCGTGAATTTGAGCCTCTCCTTAGAACTTGTGTTGTCAAAGACATGTGTGATAGAGAGAGGGAATTGACTGAAGGATCCAGCATAGAAAAGGGCAAGACATTGTTTAATGGTAATTTGATGGAGTTGGTGAGATCTTCCTCTAACACTGAATCCACAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACCAAGAGACTTGTTCGCCGACAGAAGAGGATGCTCAGTCGACTGCAAAATCTGTTTAGTTGGAACATACACTATGTTGATTCCACAGAATCAATATCAAGCAAATCAGAAGATGTATGGACACGTCAAGTAGTTGAATCTGCCGTGAAGATATTTAAATGTTTCCTGAGTGAGAATGGAAGCTTGCCATCAACCTCTGAGACTTCAAATGACTCAGGGATGAAAATAATCCAAAGGGACCTCTGGACTCAATACGTATGCAAGGCGTGCGGAGATCGGGTTCTTAGAGGACGCCATGAATGGGAACAACACAGGCAAGGTCGTGGGCACCGAAAACGTATTTCAAGTCTTAAGAGCAAGGGCCAATTTCCTGGTTTCGTGGAGCAGAAGGTGGAGTATTCTCAGTGTGACAGTGACATTATATGA 1443 0.4338 MATESTVTSNSTNGERPKVVVITGPTASGKSKLAVDLASHFPIEVINADSMQVYRGLDVLANKLPLSQQNGVPHHLLGTISPNVEFTAKAFRDSAIPIIHDILARNHVPVIVGGTNYYIQALVSSFLLDDSAEDMDESCLGDPPGITQSENSFLAENDGSSQGYDLLKDIDPVAANRIHPNNHRKIKQYISLYTRTGVLPSKVFQGKAAENWGQVDNLRYDCCFICVDASLPVLDRHVEQRVDCMMDDGLLNEVYDIYNLNADYTRGLRQAIGVREFEPLLRTCVVKDMCDRERELTEGSSIEKGKTLFNGNLMELVRSSSNTESTILLEEAIEKVKVNTKRLVRRQKRMLSRLQNLFSWNIHYVDSTESISSKSEDVWTRQVVESAVKIFKCFLSENGSLPSTSETSNDSGMKIIQRDLWTQYVCKACGDRVLRGRHEWEQHRQGRGHRKRISSLKSKGQFPGFVEQKVEYSQCDSDII 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01227 480 Pfam IPP transferase 52 349 - -
Spst11g01227 480 Gene3D Classic Zinc Finger 420 465 - -
Spst11g01227 480 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 287 IPR018022 GO:0008033
Spst11g01227 480 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 394 IPR039657 -
Spst11g01227 480 FunFam tRNA dimethylallyltransferase 419 462 - -
Spst11g01227 480 Gene3D - 144 207 - -
Spst11g01227 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 261 IPR027417 -
Spst11g01227 480 Gene3D - 17 419 IPR027417 -
Spst11g01227 480 Hamap tRNA dimethylallyltransferase [miaA]. 19 376 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01227 Spst-Chr11 36635702 36639490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01227 22 471 C2H2 Transcription Factor Family AT2G27760 55.482 1.32e-176 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01227 K00791 - gmx:100792690 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01227 11 36635702 36639490 Spst11g01227 11 36635702 36639490 ECH