Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01220 ATGAATGGCGATGGTCGGAGACGAGACCGGAGAGACACCAGAGCACTGAAGAAGCGGAAGCTGAACCGCAACCCCGAGGATGAGCTCGAAGCTAAATTAGGGTTCGATCTCTTCTCAGAGGGCGAAAAGCGACTCGGATGGCTACTCACTCTTGCATCCTCTGGGTCTCACGATGACAAAGAGCATTCGCCCTCCAGCCCGCTGCCGTTCACAATCACACCACGCCGCCATTCGCAGTTCCCACCACCGCGGGCACGGCTCGCGGTTCACAGTTCACTGTCGTTGCGGCACGTCGGAGCTATCAACATTGCTATAAGCATTTCATTCTTGCAGTTCTGGATTTTTCTGGTTTTGTTCTCTTCGGGATACCGTAATTTCTGTTCATCTGTTGAGGATGAAAACAGTTACAAAGTGTACAGTTGTATCGATCTTTACTTTGTTACACAGGATGGCTCTTCATTCAAGTCAAAATTCAGATTTCGGCCTTATTTCTATGTAGCAACAAAGGATAAAATGGAGATGGATGTTGAAGCATACTTGAGAAGACGTTATGAAGGTCAGATTGCTGATATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAACCATTTGTCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAAAGACCTGATGCCTTCTGTTGAAAGAAATAAGGCTAAGTCTGATACTGCAGAAGCCCTTGTGTTCATGTCAACAGAAAGAAGAGAACATAAACCTCAGGATTTTCTTGATTGCTTGACTGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACCATGATATACGTTGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAATGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTCTGTGCATTTGACATTGAGACTACAAAACTTCCATTGAAGTTTCCTGATGCTGACTATGATTTATGTGTCGGCGATGATATAGAGGATATAGAGTACAGTCCAAAACCTGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGGTCGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAAGTGAAACCTGGTATCTACGTGACCTATAATGGTGATTTTTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCTTGGGTTCAAAATGAGTGATGAATTGGGGTTCAAATGCGATACAAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGTCTGAAGGATTTGGCAATAGCAAGGAATGAAAATCCCGATGCTGGTGAACTGTTTTCTGCATTTTGTAGCTTTGCTGTTACAAAAGCAAAATTGGGTTATGATCCATTGGAGGTGAATCCTGAGGACATGGTTCGATTTGCAAAGGAAAAGCCCCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTATTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCTATGCCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTATGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCAAATGTTATATGCCCTAACAAGCACCAGTCTGATCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACATACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGCTTTACAGTAGAGCCATCTGCCTATCAGCAACTGATGGACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGTAAGATGGATTTGGAATCTGTTTCAAATTATGATGAAGTAAAGAATGCAATTATGGAAAAGCCGCCATCAATTGTTACGGATGAAGTTTGCACTGCATGTGATTTTAATCGTCCTGGAAAGACTTGCCTACGCAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTACTATGCTTTAAAGACACAGATTGAATCAGAGTTTGTTGATGATTCTGAGAACAACAAATCCTTATCCCACTATTCTGAGAAGAGGTCATCAAAATCTTTCCTTGACCTTCCCAAGTCAGACCAACAATCAAGACTGAGAGATCGTTTAAAGAAATACTGCCAAAAGGCATATAAACGGGTACTCAACAAACCTGTTACTGAAGTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTTCGGGATAGAAGATACGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAACTGTCTGAAGCCAAGGCTAGTGAAAATTCTATGAAGATCCAAGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATACACTGGTGCAAAAATAATTCAGAATGCCCGTTTGCTAGTAGAGAAAATAGGAAAACCACTTGAGCTAGACACGGATGGTATCTGGTGTGCACTACCGGGGTCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGACCCAAAGAAGAAGTTTACAATATCATACCCCTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAACGATCAATACCAGACACTTACAGATCCAATCAGGAAAACTTATACAACTCATAGTGAATGCTCCATTGAATTTGAGGTGGATGGACCATACAAGGCGATGATCCTTCCTGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACATTAGAGGAATGCTATTCTGCTGTTGCTTCAGTGGCAAACCGTTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCTGACACTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTGAGCAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTAGCTGACTTTCTTGGAGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTTGCAAGTGAACCAAAGGGCACACCAGTTAGCGAGCGAGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGATGGTGTACGCTTAATATTTGCAGAGGTGATGAAGTTCTATGTCCGAAAGTGGTGCAAGGTCTCAGCGGATGTTGCCATTCGTTCAATAATTGATTGGTCCTATTACAAACAGCGGCTTAGTTCTGCTATTCAGAAAATTGTCACTATTCCTGCTGCAATGCAAAAGGTTTCAAATCCAGTCCCTCGGGTGGTTCATCCTGATTGGTTGCATAAGAAGGTTCGTGAGAAAGAGGACAAGTTACGCCAACGGAAACTAGTTGATGCCTTTAAATCAATGAGCAGGAATGAGCACTCAAAAAATCATAATGACTCAAATCATGTCGCTCTTGTGATCGATGATGAGATTGTAAATGAGTTGGAGGACTTTGGAAACAAACGTAGGAGTTCTACATGCGGACCTAGACCAATTGTACGGCATTATCAAGCTAGTAATGAACAACATTCAAGGATGCTCAATGATCAACGAGATTTGGAGCAGGAGCATAATAAAGATAATAGCGTCAAGGAACATCTAATTTCACCATTACAGCAAAATGAGATGTTTGAAAATGTTGACAGAGAGGTAGATTATCAAGGATGGCTTCAAGTAAAGAAGCGAATGTGGAAAGATATCCTGGAAAGGAGAAAGAAGCGAAGATTGGAGAATTCAAAGACATCTAACCGTGAAAATGGTGTTTTTGAACAAATGAATGCTAAGAGGAATCAAGGCAGAAGCCATGTCAGTTCATATCTTAAAAGGTTTGAGTTGGACCTAACGAAGTGTCATTGGCAGATAATACAACTAGTTCCCAGTTCATTGATAGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTTAATTCAAGATCCTCAATTACCGACGAATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGAAAGCATAGTTATAACTTGTATGAGATCTCAATTAATGAAATTCAATATGGGGAACTAAGCAAAAAACTTGCAACTCTTCTGGCAGATCCTGATGTTGAGGGAGTATATGAAACTAAGGTGCCTCTGGAGTTTAATGCAATAGTCCAGCTTGGTTGCGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTACAGGAATCCTGGAATTTGAGTGAATTGCGCATGAAGACCACGACAGAATGTGCTTATCTTGAACAATCTATATCCTTCTTTTATTTGTACCACAGTATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTGTCACCGACTTTTCTTGAAAGACAATTTCATGATGCTTGTCAGGCTTTAACTATTGAGCCACCTCCGAGGAATGACATTAATTTTACGGTGGACTATGTAGCACATGTCAAGGATGCTGAAACAGTGATGCAACGAGCAATAAATGGTCACAGTCATGGGAGAGAAAATCATGTGCCTATGGTTGCTGTCATTGAATGCCCTAATGTTCAGTTAGTGAAATTGGGCATCCGAACACTGGATGATTTCCCATGCCTGAGTGTTCCTTATAATGCTCGCGACAGTCAGTACCAGATTCTTGGATGGCAACAAACTGCTGCAAAAGTTGCAATGCAACGTTGTGCTGCATCAATCCAATGGTTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCTTTAGGGAACTTCGAACTTGACTGGCTTATATTTATGGCAGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTGCTTTGGATATCTGATGATGGCCTTCCAGATTTAGGCGGGATTAATGGCGAACAAAACTGTTTTGTTGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTACAGAAACGTAACTGTGGAGTTAAAGATACACCACCTGGCTGTAAATGCTCTACTCAAATATAGCCTAGTTAACGAAATGGAAGGAGGCACTCTATTAGGATTTGGTCATGAACATGACTCTGGAGCATTTTCCATGAATGATCATAATGGTTTTGACGAGTCTAGCTCATGTGCACAAGCCTTTCGAGTCCTCAAGCAGTTGATCCAGCGGTGTCTAGCAGATGCTGTGACATCAGGAAATGTTTACGCTGATTCAATTTTGCAGCATCTATATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCACCAACTACTCCATAAGGTCATGCAAAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTCACGAAGATTATTATAGACACGGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGCGACAGTTTGTTAAGAACTATACAATCTAGAGATCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGTTATTCATGGATCAGTATAACTACGGAGGAATACCAGCAAAATCTGATGAAGCCATGAATGATAAATCTCAAATAGACATTATATCGAGCTGGAATATTGCTGAGTACTTGCCAAAAAAAGTTCAAGATGGTGACTCCTGTACTCCATCAATAAACATTGGAGCTGCTGCAGCTTTTGAATCAGAAATAACAGAATATATCAAAGGACAGATTAGCTCTTACTTTGCAGACAAACTGCTAGGAATTGTTCACGATATTAGTCTTCATATGAAGGGGATGAGCAGATCAGAAAACAACCAGAGTATATCATCAGGCCCTGATATACATAGAGGGGATGCTGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAGAATTTGCTCAAATATGTTGATGTCAGAGAGTTTGCTCCAGAAGCTGAGTTTCACGATCCTTTTCATTCCTTCATCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGCCGGGATTCGGCTTTATTAACTGAGGAGTGGCGTTGTGCAGTGCCACAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGACCGTAAGACAAAGAGAACGACTATACCACCTGCAAGATCTGGTGTGTATCAGGTGCCATCAGGTGAAAGCTGCACATTTAGCAGACCAATGTGCATGTGCAGGCTCGTTTAGGTGCAAGGAAGATGCCAATGAATTTCGTAAAAAGATGCAGGTTTTCTTGAACATAGCATCTCGTCAGACATTCCAGCTTCTCCAAGAATGTACCTCCTGGATTTTAGAGCTTATATGA 6723 0.4102 MNGDGRRRDRRDTRALKKRKLNRNPEDELEAKLGFDLFSEGEKRLGWLLTLASSGSHDDKEHSPSSPLPFTITPRRHSQFPPPRARLAVHSSLSLRHVGAINIAISISFLQFWIFLVLFSSGYRNFCSSVEDENSYKVYSCIDLYFVTQDGSSFKSKFRFRPYFYVATKDKMEMDVEAYLRRRYEGQIADIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKKDLMPSVERNKAKSDTAEALVFMSTERREHKPQDFLDCLTDLREYDVPYHVRFAIDHDIRCGQWYDVGVSNNGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLCVGDDIEDIEYSPKPEFEGCFKVTNVQNEVELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHLGFKMSDELGFKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKDLAIARNENPDAGELFSAFCSFAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTVEPSAYQQLMDNLDRDLQYAITVEGKMDLESVSNYDEVKNAIMEKPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSENNKSLSHYSEKRSSKSFLDLPKSDQQSRLRDRLKKYCQKAYKRVLNKPVTEVREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASENSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADTELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDADGVRLIFAEVMKFYVRKWCKVSADVAIRSIIDWSYYKQRLSSAIQKIVTIPAAMQKVSNPVPRVVHPDWLHKKVREKEDKLRQRKLVDAFKSMSRNEHSKNHNDSNHVALVIDDEIVNELEDFGNKRRSSTCGPRPIVRHYQASNEQHSRMLNDQRDLEQEHNKDNSVKEHLISPLQQNEMFENVDREVDYQGWLQVKKRMWKDILERRKKRRLENSKTSNRENGVFEQMNAKRNQGRSHVSSYLKRFELDLTKCHWQIIQLVPSSLIGQFFAWVVVDGSMHKIPVSVPRVFYLNSRSSITDEFMGKRVNKTLPHGKHSYNLYEISINEIQYGELSKKLATLLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRSLQESWNLSELRMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPTFLERQFHDACQALTIEPPPRNDINFTVDYVAHVKDAETVMQRAINGHSHGRENHVPMVAVIECPNVQLVKLGIRTLDDFPCLSVPYNARDSQYQILGWQQTAAKVAMQRCAASIQWLNQRIALSRYAHVPLGNFELDWLIFMADIFFSRALHDNQQVLWISDDGLPDLGGINGEQNCFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYSLVNEMEGGTLLGFGHEHDSGAFSMNDHNGFDESSSCAQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFTKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDKSQIDIISSWNIAEYLPKKVQDGDSCTPSINIGAAAAFESEITEYIKGQISSYFADKLLGIVHDISLHMKGMSRSENNQSISSGPDIHRGDAALEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVDVREFAPEAEFHDPFHSFILSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQTVRQRERLYHLQDLVCIRCHQVKAAHLADQCACAGSFRCKEDANEFRKKMQVFLNIASRQTFQLLQECTSWILELI 2240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01220 2240 Pfam DNA polymerase family B 803 1116 IPR006134 GO:0000166|GO:0003677
Spst11g01220 2240 FunFam DNA polymerase epsilon catalytic subunit 993 1185 - -
Spst11g01220 2240 Gene3D Palm domain of DNA polymerase 805 989 IPR023211 -
Spst11g01220 2240 Pfam Domain of unknown function (DUF1744) 1592 1960 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Spst11g01220 2240 CDD POLBc_epsilon 580 1182 - -
Spst11g01220 2240 Gene3D DNA Polymerase, chain B, domain 1 129 302 - -
Spst11g01220 2240 SUPERFAMILY DNA/RNA polymerases 546 1196 IPR043502 -
Spst11g01220 2240 SMART DUF1744_2 1574 1960 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Spst11g01220 2240 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 655 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Spst11g01220 2240 SMART polmehr3 313 894 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst11g01220 2240 Gene3D - 312 545 IPR036397 GO:0003676
Spst11g01220 2240 Pfam DNA polymerase family B, exonuclease domain 148 453 IPR006133 -
Spst11g01220 2240 Gene3D - 993 1185 IPR042087 -
Spst11g01220 2240 MobiDBLite consensus disorder prediction 1 23 - -
Spst11g01220 2240 Coils Coil 1267 1287 - -
Spst11g01220 2240 MobiDBLite consensus disorder prediction 54 79 - -
Spst11g01220 2240 FunFam DNA polymerase epsilon catalytic subunit 130 301 - -
Spst11g01220 2240 FunFam DNA polymerase epsilon catalytic subunit 804 989 - -
Spst11g01220 2240 SUPERFAMILY Ribonuclease H-like 139 567 IPR012337 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01220 5 58 Core DNA Replication Machinery Family AT2G27120 59.259 7.06e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01220 K02324 - gmx:100812003 3804.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01220 11 36560356 36587825 Spst11g01220 11 36560356 36587825 ECH