Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01215 ATGAATGAGTATGATTATGTTGATCTTGATTTGAAGGTTGAGTGTCCTGTGTATTCTCCAACAAAAGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCTCCTTTGAGTGCTTCAGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACGACTAGAGTGCAGCCTCTTCGCCTTACTGAATGGGATTCTGAAGATAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAGGTGTTTGCTATAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATCGACCAGCTTGGGAACAACAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGACTTATGGAAACATCGATTCCGGGAGTAACAGAACCTATGTTGTACATTGGAATGCTTTTTAGTCATGCTGCTTTAGAATTTGAAAGGGTAGTCAGAGAACATGTGTACACTACTGATATTTTATCAAGTGACGGGGAAGATGGCGCCTTCGATGTTCTCCTAGGGAAAACAACTCTATTTCCACCAAATAATTTGTTAGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAAGCTAGGGGAGTTTATAATAACCTTCTCCACAGTTGAAACCATGACTGAAGCGAGCATGATATGCTCTGGGAAGGTCCTAACATCTTGGTGGTTTAATATTTAG 873 0.3906 MNEYDYVDLDLKVECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLTEWDSEDKVTFFMSGRNYTFRDFEKMANKVFAIRYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPIDQLGNNKWNLKKLSRLPKSSLRLMETSIPGVTEPMLYIGMLFSHAALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNNLLEHEVPVYKAVQKLGEFIITFSTVETMTEASMICSGKVLTSWWFNI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01215 290 Gene3D Cupin 204 271 - -
Spst11g01215 290 ProSiteProfiles JmjN domain profile. 15 56 IPR003349 -
Spst11g01215 290 Pfam jmjN domain 16 48 IPR003349 -
Spst11g01215 290 SMART JmjN_1 14 55 IPR003349 -
Spst11g01215 290 Pfam JmjC domain, hydroxylase 204 266 IPR003347 -
Spst11g01215 290 PANTHER LYSINE-SPECIFIC DEMETHYLASE 201 265 - -
Spst11g01215 290 Gene3D Cupin 10 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01215 Spst-Chr11 36485685 36492308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01215 14 265 JUMONJI Transcription Factor Family AT2G34880 29.032 1.02e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst11g01215 JmjC 3.4e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01215 - - gmx:100798611 468.003