Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01202 ATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCCTCATATCTAAATTCCAACACAATATCTTCTTCATCTTCATCTTTTTCCTTTACTCAGCATGAGCTTGTTCATGAAACCATTCAATTCTTGCCCATTTTAAGTGAAAAGGCCTCAGAAGATGAAGTACAGAATTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTGACTGTGGCTTTGCACATTGGTTTGCCTGACACTGCTAAAGGGCATCCTGAGGTTGTTGATGATGAGAAGATGATTTTCCATGTTAAGGAAGAACAAGAGTCCTCCAAGAGAAGCTTCCATGGATGCTCCTTCAACCAAGAGAGAAGGTTTTGGATTCCAACTCCAGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGTAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGCTAAGGTTGCCATGCTACTGCTGTGCCCAGGGTTGCAAAAACAACATCAACCATCCAAGGGCCAGGCCTTTGAAGGACTTTAGAACCCTCCAAACTCATTACAAAAGAAAGCACGGCACAAAGCCCTTTATGTGCAGAAAATGTGGGAAATCATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCGCTGAAGGACCATATTAGGTCCTTCGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATCACTGGCTCTGATGAAGATGAGGTTAATGCTCATCATCACACATGA 942 0.4352 MECNVEDNKNLYLHAPTFIEWLKPCSSPSYLNSNTISSSSSSFSFTQHELVHETIQFLPILSEKASEDEVQNFEVKEEKVEQVTVALHIGLPDTAKGHPEVVDDEKMIFHVKEEQESSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRARPLKDFRTLQTHYKRKHGTKPFMCRKCGKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHHT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01202 313 SMART c2h2final6 195 227 IPR013087 -
Spst11g01202 313 SMART c2h2final6 148 170 IPR013087 -
Spst11g01202 313 SMART c2h2final6 232 252 IPR013087 -
Spst11g01202 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 252 IPR013087 -
Spst11g01202 313 FunFam Zinc finger protein WIP2 201 283 - -
Spst11g01202 313 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Spst11g01202 313 SUPERFAMILY beta-beta-alpha zinc fingers 216 252 IPR036236 -
Spst11g01202 313 Gene3D Classic Zinc Finger 147 170 - -
Spst11g01202 313 SUPERFAMILY beta-beta-alpha zinc fingers 139 171 IPR036236 -
Spst11g01202 313 Gene3D Classic Zinc Finger 191 281 - -
Spst11g01202 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Spst11g01202 313 PANTHER ZINC FINGER PROTEIN WIP2 29 303 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01202 Spst-Chr11 36348008 36350700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01202 4 300 C2H2 Transcription Factor Family AT1G08290 56.805 1.38e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst11g01202 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01202 - - gmx:100802773 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00636 5 5485587 5488515 Spst11g01202 11 36348008 36350700 PCT