Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01194 ATGGGTACAACAATAAAAAAAAGAAACAAGGAACTCAAATGGAATGTTTTGCACTGGCTTAGAATAGAAAGTGGAACTGAGAGGGTCCACAAGCATAACACAAGTGAAGAGAAAAGGAGGAATAGGAAGAGTCTATTTGTCAGTTCCCCTCCAGCTCTCATATATAACTACTGTCTAAGGAGGCTTTGCACTGAAGAGATATGTGCAGAGGAGAAACAAGCTAGACAAGCACTACAAGTTGAATTAATGTACACTCATCACCAACATCAAGGAAAGAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCATATGTTCCTTCACACAGGAAATGGATCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCTGTGCAGCAGTTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATGGGGATTCCAGGGCTTACTTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAGTTTGCATGGACAAAGTAATAACGTGACACACAAAATCTCCATAAATCCAGGTGCAGCAACAGATGAAAGACTCAGAGAAAACAATGGAACGCATGTGAACAATTTAAACCTTGCCCCTCAGTCTAATAACAAAGATTTACACATAAGTGAGGCACTGCAGATGCAAATTGAAGTTCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCTCAAGGAAAATACCTTCAAGCTGTGCTGGAGAAGGCTCAAGAAACACTTGGTAGACAAAATCTGGGAGTAGTAGGACTTGAAGCTGCCAAACTTCAACTTTCAGATCTAGTGTCCAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGAGCTGAAGGAGTTACAAGGATTTAGCCCTCACCAAACTCAAACCAACCAGCCAAATGACTGTTCTATGGACAGTTGCCTCACATCTTGTGAGGGGTCACAAAAAGAGCAAGAGATACAAAATGGGGGGATGAGCTTAAGACCCTTCAATGTCAACACATTCATGGAACGAAAGGAGGTCATCGAGGGTCCCAATCTTAACAACCTACCAAACACCGACCTCAAGTGGTGTGATCCAGTGAATAAGAACACCTTCCTTACCCCATTGAGCAGAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCAGCATTAGGAAAGAATCAGTGAAACCAGTGGCCAAAGTTTCTCAAGATTATGGACTGCCTTCATACTTTGCTGCATCAAAACTGGACCTAACCACTGAAGATAAGGATAGAAGGAGTTGTAAAGAACTGGACTTGAATGGATTCAGTTGGAACTGA 1428 0.4251 MGTTIKKRNKELKWNVLHWLRIESGTERVHKHNTSEEKRRNRKSLFVSSPPALIYNYCLRRLCTEEICAEEKQARQALQVELMYTHHQHQGKNIHSSSRMPIPSERHMFLHTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKSLHGQSNNVTHKISINPGAATDERLRENNGTHVNNLNLAPQSNNKDLHISEALQMQIEVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEAAKLQLSDLVSKVSSQCLNSAFSELKELQGFSPHQTQTNQPNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVNTFMERKEVIEGPNLNNLPNTDLKWCDPVNKNTFLTPLSRRSPSNLSMSIGLEGETENGSSIRKESVKPVAKVSQDYGLPSYFAASKLDLTTEDKDRRSCKELDLNGFSWN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01194 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 185 IPR017930 -
Spst11g01194 475 SUPERFAMILY Homeodomain-like 127 183 IPR009057 -
Spst11g01194 475 Coils Coil 234 254 - -
Spst11g01194 475 FunFam Myb family transcription factor 127 185 - -
Spst11g01194 475 Pfam MYB-CC type transfactor, LHEQLE motif 232 278 IPR025756 -
Spst11g01194 475 Gene3D - 127 185 - -
Spst11g01194 475 Pfam Myb-like DNA-binding domain 130 181 IPR001005 -
Spst11g01194 475 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 183 IPR006447 GO:0003677
Spst11g01194 475 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 90 362 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01194 Spst-Chr11 36256280 36259209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01194 160 475 G2-like Transcription Factor Family AT3G04030 50.456 5.12e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst11g01194 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01194 - - gmx:100805237 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00645 5 5549804 5553756 Spst11g01194 11 36256280 36259209 PCT