Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01192 ATGACTATAATGGGTTCACAAAGCCCAAACATAGTGAAACTGTTGTTGGACTTCGACCCTCTCTCCCCAAAAAAGATGGTTGACATGAAGCTCTATCAGGTGACAACTTTTGCATTATCTCAGTTTCTGTGCCTAAAACTGTGGTGCTCTCAGTTGGGGTCCTTGGCCATGATGATGATCAGATCAGTGATGACAAGTTGTTCCTTCTTCGAACCAACGCTTTTGTTTCTTCTATCCATTTCGGATTTAGTTGTGAAAATCCATGGCCTTGGTTTTGGAATCAACTACGGACAGATAGCCAACAATTTACCTCTTCCATCTCAAGTGGCTGTGCTTATACAATCTTTGAATGTGAGTAGGATCAAACTGTATGATGCTGATCCAAATGTTTTAGTTGCCTTCTCCGAATCCAATGTGGAATTCGTTATAGGACTTGGAAATGAGTACATAGAGAACATGACAAACCCTTCTAAAGCTCAAACTTGGATTCAGCAGCATGTCCAACCATACTTCTCACAGACCAAAATCACTTGCATCACTGTGGGAAATGAGGTATTTAATAGCAATGATACTCAGCTAATGGTGAACCTCCTCCCAGCAATGCAAACTGTACATGATGCCCTTGTCAGCCTTGGACTAGACCAGCAAGTTACTGTCACAACCGCCCATTCCTTCAACATATTATCCAGCTCCTACCCTCCTTCATCCGGGGCTTTTAGGGAAGATCTTGTGCAATATATCCAACCCCTTCTTGACTTTCATGCTCAAATCAACTCACCTTTCCTCATCAATGCATACCCTTTCTTTACATACAAAGACAACCCAAATGTGGTTCCCTTAAACTATGTGCTTTTTCAGCCAAATCAAGGCACGATTGATCCAAATACCAATTTGCATTATGACAACATGTTATATGCTCAAATTGATGCTGTCTATGCTGCCATCAAGCAAATGGGGCATGATGACATTCAAGTGAGGATTTCTGAGACAGGTTGGCCTTCTAATGGTGACCCTGAAGAGGTTGGAGCTACACCACAGAATGCAGCACTGTATAATGGTAACTTGCTCAAAAGGATCGAGCAGAAACAAGGCACTCCTGCAAAACCATCGGTTCCAATTGATATATATGTCTTTGCACTTTTTAATGAGGATTTGAAGCCTGGTCCAGCATCAGAGAGAAACTATGGCCTTTACTATCCCAATGGTTCTCCAGTTTATAACATTGGATTGAAGGGTTATCTCCCCCAGATGCCTATGGCAGCTAAATCCAATATTTTGTCAGTCAATTTGCTTGTGTGTATAGTTACAAGCTTCATCTTTGCTTTGGAGCTTTCAAGATGTTTGGAATCGGAATCAAAGAAGAGAATGTCAGAGGCGGAGGAGCTGCCCCGGTCTATCGTACGCCGCGTCGTGAAGGATAAGCTGTCCCGATGCTCTGAAGATGGAGAAATTTCAGTCAGCAAAGATAGCCTTCTCGCATTCTCGGAAAGTGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTATCAGTGCGGAGGATGTTTTCAAAGCTCTTGAAGAAACCGAGTTCTCAGAGTTTGTTCGCCCTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGCTGGAAAGAAAGTGGCAGTGTCAAAGGGAAAAGAAGATGAGCCGAGAAAGAAAAGGAAATTAAAAGCGGAGTCATCTGATAAAGGTGAGGCTTCCAATAAGAGTGACTCGTCTGATAAAGGGGAGGGTTCTGTTGAGGGTGAGGATGAGGACGACCAATGA 1821 0.43 MTIMGSQSPNIVKLLLDFDPLSPKKMVDMKLYQVTTFALSQFLCLKLWCSQLGSLAMMMIRSVMTSCSFFEPTLLFLLSISDLVVKIHGLGFGINYGQIANNLPLPSQVAVLIQSLNVSRIKLYDADPNVLVAFSESNVEFVIGLGNEYIENMTNPSKAQTWIQQHVQPYFSQTKITCITVGNEVFNSNDTQLMVNLLPAMQTVHDALVSLGLDQQVTVTTAHSFNILSSSYPPSSGAFREDLVQYIQPLLDFHAQINSPFLINAYPFFTYKDNPNVVPLNYVLFQPNQGTIDPNTNLHYDNMLYAQIDAVYAAIKQMGHDDIQVRISETGWPSNGDPEEVGATPQNAALYNGNLLKRIEQKQGTPAKPSVPIDIYVFALFNEDLKPGPASERNYGLYYPNGSPVYNIGLKGYLPQMPMAAKSNILSVNLLVCIVTSFIFALELSRCLESESKKRMSEAEELPRSIVRRVVKDKLSRCSEDGEISVSKDSLLAFSESGRIFIHYLSATANDICKESKRQIISAEDVFKALEETEFSEFVRPLKASLEEFRKKNAGKKVAVSKGKEDEPRKKRKLKAESSDKGEASNKSDSSDKGEGSVEGEDEDDQ 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01192 606 Coils Coil 513 533 - -
Spst11g01192 606 FunFam DNA polymerase epsilon subunit 3 454 595 - -
Spst11g01192 606 FunFam Glucan endo-1,3-beta-glucosidase 14 90 414 - -
Spst11g01192 606 Gene3D Glycosidases 91 414 - -
Spst11g01192 606 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 461 530 IPR003958 -
Spst11g01192 606 Gene3D Histone, subunit A 451 605 IPR009072 GO:0046982
Spst11g01192 606 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 78 427 IPR044965 GO:0004553|GO:0005975
Spst11g01192 606 SUPERFAMILY (Trans)glycosidases 92 408 IPR017853 -
Spst11g01192 606 SUPERFAMILY Histone-fold 462 568 IPR009072 GO:0046982
Spst11g01192 606 Pfam Glycosyl hydrolases family 17 93 408 IPR000490 GO:0004553|GO:0005975
Spst11g01192 606 MobiDBLite consensus disorder prediction 553 606 - -
Spst11g01192 606 MobiDBLite consensus disorder prediction 553 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01192 Spst-Chr11 36242710 36251694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01192 142 456 Glycoside Hydrolase AT2G27500 63.924 2.89e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst11g01192 Glyco_hydro_17 4e-88 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01192 - - ccaj:109798347 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00648 5 5563887 5565474 Spst11g01192 11 36242710 36251694 PCT