Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01191 ATGCCTCGAGGAAAAGCAAATTCTTCATCAGCAGCTAAGCCATCTGAGCCTGAGAAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGAAAATGATCCGGAGGGAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGTGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAGGAGAACCCGGAGGAGGTAGAGGTAGAAGAAGAGGAAGAGGAGGAGGAGGATGAGGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGTGGAAGAAGATGAAGCCATACAAAACCATAGCAGTGACGAAGCAAAGTTGGAAGACGAGTATGAGAAGAAAAAACATGCTGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATACCATATGATGTCTCAATTGAGGATTTGAAATCTTTTTGTGAGCGTATTGGGGAAGTTGCAGAGGTTCGAGTAATGAAAGGAAAGCATTCCATTGAGAACAAGGGATTTAGTTTTGTGACCTTTAGAAGCGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTGAATAATACAGAATTTAAGGGTAAAAAAATAAAATGTTCTACAACGCAAGCCAAACACCGTCTTTTTATTGGGAATGTTCCTAGAGGCTGGGGTGTTGAAGATCTGAGGAAGATTGTAACTGAGATTGGACCCGGAGTTACCGGTGTGGAACTAGTCAAGGATATGAAGAACACCAACAACAACCGGGGCTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAGTATTCTAAACTAAAGATGATGAGCCCAACATTTAAGCTAGGTGAGAATGCTCCAACAGTGAGCTGGGCTGATCCTAAAAATGCTGATTCTTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTGCCAAAGAATGTGACTCAAGAGGAGTTGAAGAAGCTTTTCGAACGTCATGGGAAGATAACAAAGGTGGTTCTTCCACCAGCTAAGTTTGGACAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCCATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGCCAAATTTTAGAGTGCTCTCTGGCAAAGCCACAGTCTGATCAAAAGTCTGGAGGATCAAATACACAGAAGCCGGGACCAGGATTGCTTCCTAGCTATCCACCACATGCCGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTTCAGGATATCCCGCTCCTGGTCTTACACAGCCCTTGCTATATGGAGGAGCTCAAGCTCCCGCTGGAATGGCCATGATGCCCATGCTTTTGGCTGATGGACGAATTGGATATGTCTTGCAACAGCCAGGAGTGCCGCCACATGCCCCATCCTCACATCAAAGAGGTGGCCGGAGCAGTGGCAGTGGTGATGGCAACAGGAATGCCAGCAGTTTTAGTAAGGGAAGGCACAACAATGACGGTAGTCAAGGGCGCAGATACCGCCCATATTAG 1536 0.4492 MPRGKANSSSAAKPSEPEKPVESDEKVDFEEENDPEGAMEEEIEYEEVEEEVEVEEIEEEVEEEEEENPEEVEVEEEEEEEEDEEEEEEEEEEEVEEDEAIQNHSSDEAKLEDEYEKKKHAELLSLPPHGSEVYIGGIPYDVSIEDLKSFCERIGEVAEVRVMKGKHSIENKGFSFVTFRSVELASKAIEELNNTEFKGKKIKCSTTQAKHRLFIGNVPRGWGVEDLRKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNNACAEYSKLKMMSPTFKLGENAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEELKKLFERHGKITKVVLPPAKFGQEKNRIGFVHFAERSNAMKALKNTERYELEGQILECSLAKPQSDQKSGGSNTQKPGPGLLPSYPPHAGYGLVGGAYGALGSGYPAPGLTQPLLYGGAQAPAGMAMMPMLLADGRIGYVLQQPGVPPHAPSSHQRGGRSSGSGDGNRNASSFSKGRHNNDGSQGRRYRPY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01191 511 MobiDBLite consensus disorder prediction 27 101 - -
Spst11g01191 511 SMART rrm2_1 132 205 IPR003954 GO:0003676
Spst11g01191 511 SMART rrm2_1 306 379 IPR003954 GO:0003676
Spst11g01191 511 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 212 292 - -
Spst11g01191 511 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 504 - -
Spst11g01191 511 SUPERFAMILY RNA-binding domain, RBD 128 296 IPR035979 GO:0003676
Spst11g01191 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 293 IPR000504 GO:0003723
Spst11g01191 511 Coils Coil 38 121 - -
Spst11g01191 511 SMART rrm1_1 212 289 IPR000504 GO:0003723
Spst11g01191 511 SMART rrm1_1 306 379 IPR000504 GO:0003723
Spst11g01191 511 SMART rrm1_1 132 205 IPR000504 GO:0003723
Spst11g01191 511 MobiDBLite consensus disorder prediction 474 499 - -
Spst11g01191 511 CDD RRM_SF 133 205 - -
Spst11g01191 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Spst11g01191 511 MobiDBLite consensus disorder prediction 382 399 - -
Spst11g01191 511 MobiDBLite consensus disorder prediction 382 404 - -
Spst11g01191 511 Gene3D - 44 211 IPR012677 -
Spst11g01191 511 Gene3D - 212 290 IPR012677 -
Spst11g01191 511 MobiDBLite consensus disorder prediction 462 511 - -
Spst11g01191 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Spst11g01191 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 272 IPR000504 GO:0003723
Spst11g01191 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Spst11g01191 511 MobiDBLite consensus disorder prediction 1 114 - -
Spst11g01191 511 Gene3D - 291 412 IPR012677 -
Spst11g01191 511 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 294 403 - -
Spst11g01191 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Spst11g01191 511 SUPERFAMILY RNA-binding domain, RBD 302 400 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01191 Spst-Chr11 36234991 36239139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01191 133 471 Eukaryotic Initiation Factors Gene Family AT4G34110 24.800 2.64e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01191 K13161 - gmx:100806658 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01191 11 36234991 36239139 Spst11g01191 11 36234991 36239139 ECH