Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01182 ATGACAAATATTATGGAAGATCATGCACCTGGTTTTCGATTCTTCCCAACAGAAGAAGAGCTTGTTGGATTCTACCTACACAACAAGCTAGAAGGTTTAAGAAATGCTGCAGCCATAGACAGAGTTATCCCAGTTGTTGATATAAATGGAGTGGAGCCTTGGAACCTCCCAACACTTGCTGGGGAGCGTTGTCGTGGGGATACCGAGCAATGGTTTTTCTTTTCGCCTGGCCAAGAGAGAGAAGCCAGGGGAGGGAGACCTAGCAGAACCACAGCTTGTGGGTATTGGAAAGCTACTGGTTCTCCTGGCTATGTTTATTCTTCTGATAACAAAGTCATTGGGGTCAAGAAATCCATGGTCTTCTACAAAGGAAAAGCCCCTATGGGAAAAAAAACCAAATGGAAGATGAATGAGTATAGAGCCATTTCAATCCCTCACCAATCCTTTCCTGCCACCCCTCAGTTGAGATGTGAATTCAGCTTATATCGGGTGTATATCGTGTCTGGAAGCTTTCGAGCATTTGATCGACGTCCTTCAGAAGCAGAAGCAGCAGAGAGGCGGGTTCATGGAACTGAGAACAGATTTGGTGGGGCACGTGTTCACCCAAGTTCATCTCAAATCTCTCACTTTCTGGAACCCTCTCAGAGTAGCACAAACTGGGAGCAGCAGAATAATAATAATGAGGTCCAGCTTGAAGAACCTTTATGGGAATTGGAATGGGAACAATTCAATTGGGTCTAG 741 0.4521 MTNIMEDHAPGFRFFPTEEELVGFYLHNKLEGLRNAAAIDRVIPVVDINGVEPWNLPTLAGERCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKATGSPGYVYSSDNKVIGVKKSMVFYKGKAPMGKKTKWKMNEYRAISIPHQSFPATPQLRCEFSLYRVYIVSGSFRAFDRRPSEAEAAERRVHGTENRFGGARVHPSSSQISHFLEPSQSSTNWEQQNNNNEVQLEEPLWELEWEQFNWV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01182 246 ProSiteProfiles NAC domain profile. 8 167 IPR003441 GO:0003677|GO:0006355
Spst11g01182 246 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 214 - -
Spst11g01182 246 Pfam No apical meristem (NAM) protein 10 140 IPR003441 GO:0003677|GO:0006355
Spst11g01182 246 MobiDBLite consensus disorder prediction 198 224 - -
Spst11g01182 246 Gene3D NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Spst11g01182 246 SUPERFAMILY NAC domain 6 165 IPR036093 GO:0003677|GO:0006355
Spst11g01182 246 MobiDBLite consensus disorder prediction 184 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01182 Spst-Chr11 36131870 36132839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01182 6 245 NAC Transcription Factor Family AT3G44350 53.689 6.50e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst11g01182 NAM 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01182 - - gmx:100808618 373.629