Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01163 ATGTCGGCCCCACGCGCTTCCTCCGCCGCCGCCGCCACCACCGCCTCCTCCAATCCGCCTGACCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCCTCCATGAAACCGCCCTTCTCCACCGCCGGAGACTACCACCGCTTTGCCCCCGACCACCGCCGCAGCCTCGACGCCGAAGCCGTCGTCGTCAAGACTCCCTGGGGTTTGTGGTTCAGTGTTGGTCGCTCGAAGAGTTTGCAGAGAACTAGAGATCTACTCAATTCAGGGATTGAATTAAGCAATGAGGAACTTGAAAGGATGTGCTTGGTTGATCATCAGAAGATGAGTTCGAGATTAACGTTGGAGCCTGCCAAATGCATAGGTTTTTATTGGACATTTGATTTGACCACGGAACATTCACTTTATCCATATGTTCCTTGGTTAGGAATTCTGAGTTTGGCTCTGACACATTCTTTTGGGGTGGCTTTAATACTTTGGGCTATTCTCCATTATGATAAGATGATTATGCAATTGAAGCGGAAGAGTGAAGCAACTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGATCCACTGAACCAGCTAGTAGTCCTTTTCAGACACCTGTATCAGGAAAGACAGGGAAGGGTGGCAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGCTGGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATCGGCCTTATAGAAAAGAAACTAAAGAACCGAATTCAGTGGAAGGGACTGGATGTTTCAAGACCTGGTGAGACCGATGATAGTTTTGCTAATTTACAGGCAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAGGAAAGACTGCGGGATCTCAGTGAAGATGAAAACAATGAGAGGTTACTTTTTGTTACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAGCGGAGATATAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGAGATTAATGGTGTTGATGTTGCATCCAAACTTCCATCCAGTCCAGATGTTAACAAACATCAATCAACAGTGGTCCCAGAGGATAGAGGGAAAGGCATAGAAGTTCATGGACAAGATGTTCACGGGCCGAGTTCAGATTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGAGGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAGTGGAATGAACTGGATCCGCTTCAAGAAGATTACTGTGTGACTCGCGAGAACACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAGGTGTCTTCCGCATCGAAACCCACTGGAGGTTGA 1704 0.4589 MSAPRASSAAAATTASSNPPDQIMHSMKRQLPFSSMKPPFSTAGDYHRFAPDHRRSLDAEAVVVKTPWGLWFSVGRSKSLQRTRDLLNSGIELSNEELERMCLVDHQKMSSRLTLEPAKCIGFYWTFDLTTEHSLYPYVPWLGILSLALTHSFGVALILWAILHYDKMIMQLKRKSEATDFEADSGDRMTPGSTEPASSPFQTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGETDDSFANLQAEVENLTMEERRLDEQIREMQERLRDLSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVASKLPSSPDVNKHQSTVVPEDRGKGIEVHGQDVHGPSSDFTTSQDFVSGIMKIVPSDVASEADYWLLSEADVSITDMWRTEPGVEWNELDPLQEDYCVTRENTSTPSHPSNVGEVSSASKPTGG 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01163 567 MobiDBLite consensus disorder prediction 191 218 - -
Spst11g01163 567 MobiDBLite consensus disorder prediction 540 567 - -
Spst11g01163 567 Pfam E2F/DP family winged-helix DNA-binding domain 250 313 IPR003316 GO:0005667|GO:0006355
Spst11g01163 567 MobiDBLite consensus disorder prediction 180 218 - -
Spst11g01163 567 CDD E2F_DD 324 430 IPR032198 GO:0046983
Spst11g01163 567 SUPERFAMILY "Winged helix" DNA-binding domain 248 311 IPR036390 -
Spst11g01163 567 MobiDBLite consensus disorder prediction 1 24 - -
Spst11g01163 567 Coils Coil 264 284 - -
Spst11g01163 567 Coils Coil 326 367 - -
Spst11g01163 567 Gene3D - 242 315 IPR036388 -
Spst11g01163 567 SUPERFAMILY E2F-DP heterodimerization region 326 430 IPR037241 -
Spst11g01163 567 FunFam E2F transcription factor 1 242 315 - -
Spst11g01163 567 MobiDBLite consensus disorder prediction 538 567 - -
Spst11g01163 567 Gene3D - 320 430 - -
Spst11g01163 567 SMART E2F_TDP_2 248 313 IPR003316 GO:0005667|GO:0006355
Spst11g01163 567 PANTHER TRANSCRIPTION FACTOR E2F 191 532 IPR015633 GO:0000978|GO:0006357
Spst11g01163 567 Pfam E2F transcription factor CC-MB domain 329 429 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01163 Spst-Chr11 35976766 35982108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01163 201 566 E2F-DP Transcription Factor Family AT5G22220 62.821 4.74e-150 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst11g01163 E2F_CC-MB 8.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01163 K06620 - gmx:100819817 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01163 11 35976766 35982108 Spst11g01163 11 35976766 35982108 ECH