Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01147 ATGGCAGAAGTTGAAATCCCTCAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTCACTGGAATTACATATGATAGAGAAGGCATAGAGGAGTGGTTGCGTAAGGCCAAAGATTGTGTGTGTCCTGTTACAAAACAACCACTTCCAAGAAGCTCTCAATACTTGACCCCTAACCACACACTTCGGAGGCTAATCCAAGCTTGGTGTTCAACAAACACAGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAACTTGTGAAGGGTCTCGAGGCTCCTCATTCTTGTGGAACATCGGTGGAGAAGTTGCATGCTTTGGCTACACAAAGCCAGAGTTACAGAAGTTGCATGGCTGAGGCTGGTGTAGCCAAGGCCATGGTCAAGGTGATTAACAATAATTTCCAAGAAGGAAACACCATTTGCATAGAAGAAGCTTTGAGAATTGTTCATCTTCTTTGGAAAAATGATAATCACAACAGCATGAAAACTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCTTTGACTTGGATTTTGAAGCTTCATTTGGATGACAACAACATCAAGTTGGTAAACGAAGCACTGCCCCTTTTGAAGTTGACAATCGAAGTTGCTGATTCAACCCTTTTGGGAAATTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGTATTGACAAAGAGAGTACTATCTCAACAAGCTATCAAATCTTCTTTGCATGTGCTTATACAAACTAGCCTTTTGGGTAGAAACAGAACCAGGATTGTTGAAGCAGGTGCAGTGACGCAACTCATAGAGCTTGAGCTTGAGAAACCAGAGAAGAACATGACAGAGCTCATATTCAACCTTTTGGCACATCTGTGTTCTTGTGCTGATGGAAGAGAACAACTTCTAAAACATGCTGCGGGCATTGCAGTGGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGACAGAGCCCTTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTAAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTATGGAACAATTCTCCTTGCATACAACTGTATTTGTTTACTAGACACCAAAGATGA 1233 0.4209 MAEVEIPQYFVCPISFQIMEDPVTTVTGITYDREGIEEWLRKAKDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWCSTNTANGVDRIPTPKTPLSMIQVQKLVKGLEAPHSCGTSVEKLHALATQSQSYRSCMAEAGVAKAMVKVINNNFQEGNTICIEEALRIVHLLWKNDNHNSMKTLVGESLDFINSLTWILKLHLDDNNIKLVNEALPLLKLTIEVADSTLLGNLSLEFFKEMVRVLTKRVLSQQAIKSSLHVLIQTSLLGRNRTRIVEAGAVTQLIELELEKPEKNMTELIFNLLAHLCSCADGREQLLKHAAGIAVVSKRVLRVSAATDDRALHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01147 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Spst11g01147 410 SUPERFAMILY ARM repeat 114 388 IPR016024 -
Spst11g01147 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Spst11g01147 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Spst11g01147 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Spst11g01147 410 Gene3D - 108 391 IPR011989 -
Spst11g01147 410 SUPERFAMILY RING/U-box 3 84 - -
Spst11g01147 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Spst11g01147 410 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01147 Spst-Chr11 35802743 35803975 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01147 3 400 U-box Gene Family AT2G35930 38.557 1.49e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01147 - - gmx:100787426 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00686 5 5932537 5933622 Spst11g01147 11 35802743 35803975 PCT