Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01145 ATGGATGAAATGGAGGTTCCTACCCTTTTCCTGTGCCCAGTTTCTCTGCAGCTTATGAGAGACCCTGTGACAGTGTGCACAGGAATCACATATGACAGAGAAAACATTGAGAGATGGTTATTTTCATGCAAGAACAGCAGAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACCCTCCAACGTTTGATCCAAGCTTGGTGCATCCACAATGCCTGGCTTGGACTTGAAACCTTTTCATCTCCAAAGCCAACCATTGACCAAACTGAAATTGTCAAGCTTCTCTTAGAGGCAAAGATGTTCCCAGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTTTTGAAAGTGAAAGTAACAAAATCTGTTTGCAGTCTGCTGGTGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAGCCGTTACGAGTGAAGCAGCTATAGAAGTCATGTTTCACCTGCACCCTTCTGAATCTCAGCTTAAAAACCTGATGAGCAATGAAGGAGTTCAGTTTGTTGAGTCTTTGCTTCATGTCTTGAAGCTTGGAAAGTGCCAATCTCGAGGTTATGCAACTGTGCTATTGAAGTCAGTATTTAAGGTGGCTGGTCCAACCCAATTGAACAATGTCACAATAGAGCTGTTTGGGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACCAGAGGCTTCTAAGGCAGCATTGAAACTTCTAGTGGAGTTGTGCTCATGGGGCAGGAACAAGGTCAAAGCAGTTAAGAGTGGTGGGGTTTTAGTCCTCATTGATCTACTTCTTAATGTGTCTGAAAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGACAAACTTTGTGGCTGTGCAGAAGGGAGGGCTGAATTGGTGAACCATGGAGCTGGAGTGGCTGTTGTGTCAAAGAAAATTCTGAGGGTGTCACAAGCGGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACTCCTAGAGTCCTTGATGAAATGTTGCTATTTGGGGCAGTATCAAAGTTGTGTTTGGTGCTTCAGGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCTAGGGAGGCACTCAAATTGCATTCTATGGTTTGGAGGAACTCCACATGTATTCCTGTCCCTTTGCTTGCATCCTATCCATGA 1200 0.4417 MDEMEVPTLFLCPVSLQLMRDPVTVCTGITYDRENIERWLFSCKNSRTCPVTRQSLSHTDLTPNHTLQRLIQAWCIHNAWLGLETFSSPKPTIDQTEIVKLLLEAKMFPEKQLKCLSRLQYIAFESESNKICLQSAGAIDFLASTMMINSAVTSEAAIEVMFHLHPSESQLKNLMSNEGVQFVESLLHVLKLGKCQSRGYATVLLKSVFKVAGPTQLNNVTIELFGEIIRVLRDQISPEASKAALKLLVELCSWGRNKVKAVKSGGVLVLIDLLLNVSERRACELMLIALDKLCGCAEGRAELVNHGAGVAVVSKKILRVSQAASDRGVKILTSICRHSATPRVLDEMLLFGAVSKLCLVLQVEGCFKAKERAREALKLHSMVWRNSTCIPVPLLASYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01145 399 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Spst11g01145 399 CDD RING-Ubox_PUB 7 61 IPR045210 -
Spst11g01145 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Spst11g01145 399 Gene3D - 92 387 IPR011989 -
Spst11g01145 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 82 IPR013083 -
Spst11g01145 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Spst11g01145 399 SUPERFAMILY ARM repeat 109 361 IPR016024 -
Spst11g01145 399 SUPERFAMILY RING/U-box 3 82 - -
Spst11g01145 399 PANTHER WDSAM1 PROTEIN 3 391 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01145 Spst-Chr11 35792708 35793907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01145 2 399 U-box Gene Family AT2G35930 48.762 8.99e-136 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01145 - - gmx:100778012 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00687 5 5943049 5944968 Spst11g01145 11 35792708 35793907 PCT