Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01140 ATGTTTGGGAGGGCACCGAAGAAGAGTGATAACACACGGTACTACGAAATCCTCGGCGTGTCCAAGAATGCTTCGCAGGACGATTTGAAGAAGGCATACAAGAAAGCAGCTATAAAAAATCACCCCGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAGTTGGCGCAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGATATATATGATCAGTATGGTGAAGATGCGCTCAAGGAAGGAATGGGCGGTGGCGGTGGCCACGACCCGTTCGATATCTTCTCATCGTTCTTTGGCGGTGGGAGTCCGTTTGGATCAGGTGGTAGTAGCCGCGGTAGGAGACAGAGACGCGGAGAAGATGTGGTTCACCCTCTCAAGGTTTCTCTGGAGGACCTTTACCTGGGGACTTCAAAGAAGCTCTCCCTCTCCAGAAATGTCATATGCTCCAAGTGCAGTGGCAAGGGTTCTAAGTCTGGGGCTTCTATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTGTCTATAAGACACCTTGGTCCATCCATGATTCAACAGATGCAGCATGCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGACAGAGATCGCTGCCCACAGTGCAAGGGAGAGAAGGTTGTGCAGGAGAAGAAAGTTCTTGAAGTTCATGTGGAGAAGGGAATGCAGAATGGGCAGAAAATTACATTCCCTGGTGAAGCTGATGAAGCGCCTGATACAATTACCGGCGACATTGTCTTTGTCCTTCAGCAGAAGGAACATCCCAAATTCAAAAGAAAGGCTGAAGACCTTTTTGTAGAGCACACCTTGTCCCTTACCGAGGCTTTGTGTGGTTTCCAATTTGTCTTGACTCACTTGGATGGCCGTCAGCTTCTTATTAAATCAAATCCCGGGGAAGTTGTCAAACCTGATTCATACAAGGCTATTAATGATGAGGGAATGCCCATGTATCAGAGGCCATTCATGAAGGGGAAGCTTTATCTCCACTTCACTGTGGAATTCCCAGATTTTCTAAATCCGGATCAGGTTAAGGCTTTGGAGGCTGTTCTGCCCCCGAAGGTGCCTTCACAGTTGACTGACATGGAGCTGGATGAGTGTGAGGAGACCACACTTCATGATGTCAATATGGAGGAGGAGTCGAGGAGGAGGCAGCAACAAGCTCAGGAGGCGTATGAGGAGGATGATGATATGCCCGGTGGTGCACAGAGGGTACAGTGTGCCCAGCAGTAA 1254 0.4872 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKRDIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVHVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYLHFTVEFPDFLNPDQVKALEAVLPPKVPSQLTDMELDECEETTLHDVNMEEESRRRQQQAQEAYEEDDDMPGGAQRVQCAQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01140 417 CDD DnaJ 14 63 IPR001623 -
Spst11g01140 417 Gene3D DnaJ domain 10 108 IPR036869 -
Spst11g01140 417 FunFam dnaJ protein homolog 10 109 - -
Spst11g01140 417 MobiDBLite consensus disorder prediction 378 398 - -
Spst11g01140 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 114 271 IPR008971 GO:0006457|GO:0051082
Spst11g01140 417 FunFam DnaJ subfamily A member 2 148 214 - -
Spst11g01140 417 FunFam Chaperone protein dnaJ 3 289 360 - -
Spst11g01140 417 Gene3D - 262 344 - -
Spst11g01140 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Spst11g01140 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Spst11g01140 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Spst11g01140 417 Gene3D - 148 214 - -
Spst11g01140 417 SMART dnaj_3 12 66 IPR001623 -
Spst11g01140 417 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Spst11g01140 417 Pfam DnaJ domain 14 71 IPR001623 -
Spst11g01140 417 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Spst11g01140 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 398 IPR044713 GO:0006457|GO:0030544
Spst11g01140 417 Gene3D - 109 260 - -
Spst11g01140 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Spst11g01140 417 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Spst11g01140 417 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Spst11g01140 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 382 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Spst11g01140 417 MobiDBLite consensus disorder prediction 378 417 - -
Spst11g01140 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Spst11g01140 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Spst11g01140 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Spst11g01140 417 CDD DnaJ_C 119 346 - -
Spst11g01140 417 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Spst11g01140 417 FunFam Chaperone protein dnaJ 3 215 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01140 Spst-Chr11 35723172 35725436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01140 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.57e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01140 K09503 - gmx:547558 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01140 11 35723172 35725436 Spst11g01140 11 35723172 35725436 ECH
Spst5g00698 5 6052004 6054032 Spst11g01140 11 35723172 35725436 PCT