Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01135 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTATGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTGTCAGTTAACATGGGAGCGTCACTTCAACCATTTCCTCCTCAAGACCCTCAGTCACAGAAGCAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAGCTGGGATCCTCATCTTCAAAATGTAACAAAGTAGCGCCATTTGAGGCAGTAGAGCATGAACAACCAAGGATTCCTCCTATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCTTATAATCGATTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAACAAGCAAGGAAAGTTGGACCAGGGGGAAGAAGCTGAAAAGTCCAATGGATTCTACTGA 552 0.4529 MSMEMMATERVCYVHCNFCNTILAVSVPYSSMLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKQHLSFEEPSSKELGSSSSKCNKVAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNKQGKLDQGEEAEKSNGFY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01135 183 SUPERFAMILY HMG-box 105 153 IPR036910 -
Spst11g01135 183 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Spst11g01135 183 Gene3D High mobility group box domain 109 178 IPR036910 -
Spst11g01135 183 CDD HMG-box_SF 114 150 - -
Spst11g01135 183 MobiDBLite consensus disorder prediction 163 183 - -
Spst11g01135 183 MobiDBLite consensus disorder prediction 57 86 - -
Spst11g01135 183 FunFam axial regulator YABBY 5-like 98 156 - -
Spst11g01135 183 Pfam YABBY protein 7 160 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01135 Spst-Chr11 35682469 35688711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01135 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 65.426 2.23e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst11g01135 YABBY 8.7e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01135 K25796 - gmx:100500026 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00701 5 6084779 6094756 Spst11g01135 11 35682469 35688711 PCT