Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01133 ATGAAATCACATGACAAGGTCAACAATGCAGCCCCCTCCAAGCCTTCTAATGAACCCAAGCCTTCTTCGGATAAACCCCAGTCCGAGAAAAACGTGGCTGGAGGTCAAGAAAGTTCAGGGAGGAGGGTAACTAGCAAATATTTTAACACAGACAAGCAAAAGGTGGAAGATGAGAAAGAAACGCAGGAGCTACCTGCTAAAAGAAAGAGTGTGAAGGACAGTGAAGATATACCAGAGCCTAAGAAAATTCATGGCGATGACTCTGTATTGCCCGCTAATAAAAAGAAGTTATCTGAGACCACTCCAACAAAAAAATTGAAGAGTGGATCAGGTAGGGGGATTCCCCAAAAATCTGCAGTATTGGAAGAAAGTGATGAAGATGATAACAAAGATGCTGTGTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGTGGAAGAGGAGCAACTGGGCGATCAACTGGTGGGAGAGGTAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATCATCTGTTATGTGATGAAGATATTGGGGGACGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACTTCCTTCCTCACAGAGGATGGATTGTTTGATATGATTCGGGCATCAAAATCTGCAAAAACTCCTCCACAAGCAGACAAGAAACCTATGAATAAGGCTGCTGCAGTAGCATCCCAGTCAAAAGTTTCTGCGAAATCACAAGTTAAGGTCCCTCTGTCTTCACAGTCACCTTCTAAACAAGCCAAGCAAAAGAATGCTACTACTGTTCAGTCTTCTGTGATGTGGACAGAGAAATATCGCCCTAAAGATCAAAAGGATATAATAGGGAATCAGTCACTTATTGTCCAACTTCGCAATTGGTTGAAAGCTTGGCATGAGCAATTTTTGGACACTGGTAACAAAAAACAGGGAAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGTAAAACAACTTCAGCACTGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAGTTGAAAAAGGAATTAGTGGAAGCAAGACCAATTCTGTTAAGGAACTTGTAACCAATAAGTGTCTTGGTGTTAATATGGAACGGTCCAAGAAATCTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGAGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAGGGATTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCAGTAAACCAGTTACAGTATATGAGCCTCTCTATGTCAGTTATCAACTATGATGACATTAGACAACGCTTTCTTACCAATTCAAAGGATGAAGACATTTCGCCATTCACAGCTGTTGACAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAAACCAAGCTTGGCTGGTAAGGATGACAATGGCATAAAACGCATGAATCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTACTGCAACATGCATAATTCCTGCATCATTGTTGCATGGGCAAAGGGAAATACTTGAACAGGGAGAACGAAATTTTAACCGGTTTGGTGGGTGGCTTGGGAAGAACTCAACAATGGGCAAAAACTTCAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGGGAATCTAGTTCAGGAAGGGATGCCATTCGCATGGAATACCTTACTCTTATTCTTAAACATTTGACTGAACCCTTGCGCAGCCTGCCCAAGGCTGAAGCAGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAAGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATTCAGCCTGCCGTTAAGTCAGCTTTGACAAAAGCATACAAAGAGCAAAGCACATCTCGGGTGGTTCGAGTTGCAGATCTAATTACTCTTCCTGGAGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTTGAACCGGCTGAGGAAGGAGTGGAAAAAGGGGAAGGTGAAACCTTGGACGAAAGTGAAAAAGAGAACACCTCTGATACAGAAGAGTTGGAAGGCACCGCCAAGGGCGAGAAACTGCAATCAGAACTTCAAAGCTGGAATTCAAAAGCCACGGAAGTACAGTTGGAACTGAAGGGAACGGGAAATTCAAGCTCCAAGAAGGCATCGGGTGGTAGAGGTAAAGGTGCTTCAACATCTGGGAAGAAGGTTGCTCAAGCTCCAAAGACGGCTCCAAAAAGAAAGAGGTGA 2811 0.4294 MKSHDKVNNAAPSKPSNEPKPSSDKPQSEKNVAGGQESSGRRVTSKYFNTDKQKVEDEKETQELPAKRKSVKDSEDIPEPKKIHGDDSVLPANKKKLSETTPTKKLKSGSGRGIPQKSAVLEESDEDDNKDAVSAVKSAGRGGGGRGATGRSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNHLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKSAKTPPQADKKPMNKAAAVASQSKVSAKSQVKVPLSSQSPSKQAKQKNATTVQSSVMWTEKYRPKDQKDIIGNQSLIVQLRNWLKAWHEQFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSALLVCQELGFQAIEVNASDSRGKADSKVEKGISGSKTNSVKELVTNKCLGVNMERSKKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGIQVNEIALEELAERVNGDMRMAVNQLQYMSLSMSVINYDDIRQRFLTNSKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSTATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDAIRMEYLTLILKHLTEPLRSLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSTSRVVRVADLITLPGVKKAPKKRIAAILEPAEEGVEKGEGETLDESEKENTSDTEELEGTAKGEKLQSELQSWNSKATEVQLELKGTGNSSSKKASGGRGKGASTSGKKVAQAPKTAPKRKR 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01133 936 ProSiteProfiles BRCT domain profile. 185 266 IPR001357 -
Spst11g01133 936 MobiDBLite consensus disorder prediction 879 913 - -
Spst11g01133 936 FunFam Replication factor C subunit 1 509 580 - -
Spst11g01133 936 PIRSF RFC1 1 911 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Spst11g01133 936 CDD BRCT_RFC1 185 263 - -
Spst11g01133 936 MobiDBLite consensus disorder prediction 1 186 - -
Spst11g01133 936 SUPERFAMILY BRCT domain 185 266 IPR036420 -
Spst11g01133 936 MobiDBLite consensus disorder prediction 9 46 - -
Spst11g01133 936 Gene3D - 322 508 IPR027417 -
Spst11g01133 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 569 IPR027417 -
Spst11g01133 936 CDD AAA 375 472 - -
Spst11g01133 936 SUPERFAMILY post-AAA+ oligomerization domain-like 580 725 IPR008921 GO:0003677|GO:0006260
Spst11g01133 936 MobiDBLite consensus disorder prediction 47 102 - -
Spst11g01133 936 SMART AAA_5 374 510 IPR003593 GO:0016887
Spst11g01133 936 FunFam Replication factor C subunit 1 322 508 - -
Spst11g01133 936 SMART BRCT_7 187 265 IPR001357 -
Spst11g01133 936 CDD HLD_clamp_RFC 509 567 - -
Spst11g01133 936 Gene3D - 581 690 - -
Spst11g01133 936 MobiDBLite consensus disorder prediction 844 936 - -
Spst11g01133 936 MobiDBLite consensus disorder prediction 285 318 - -
Spst11g01133 936 MobiDBLite consensus disorder prediction 844 877 - -
Spst11g01133 936 FunFam Replication factor C subunit 1 581 690 - -
Spst11g01133 936 MobiDBLite consensus disorder prediction 119 134 - -
Spst11g01133 936 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 6 907 - -
Spst11g01133 936 Gene3D - 509 579 - -
Spst11g01133 936 Pfam ATPase family associated with various cellular activities (AAA) 378 475 IPR003959 GO:0005524|GO:0016887
Spst11g01133 936 Gene3D BRCT domain 162 264 IPR036420 -
Spst11g01133 936 MobiDBLite consensus disorder prediction 266 318 - -
Spst11g01133 936 FunFam Replication factor C subunit 1 161 264 - -
Spst11g01133 936 Pfam Replication factor RFC1 C terminal domain 649 811 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Spst11g01133 936 Pfam BRCA1 C Terminus (BRCT) domain 187 262 IPR001357 -
Spst11g01133 936 MobiDBLite consensus disorder prediction 169 184 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01133 1 892 Core DNA Replication Machinery Family AT5G22010 66.667 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01133 K10754 - gmx:100790070 1557.73