Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01127 ATGATGGATCCCGATTTGATCAGAATCGCTCAGGAGCAGATGAGTCGCATGTCCCCTGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAGCAGTTAAAGCATACCCGTCCGGAAGAAATGGCTGAGATTGGGGAGAAGATGGCTAATGCCTCCCCTGATGAAGTGGCAGCTATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAGGAAAGTTCGGTGAAGCTTTGAAGAAGTATATGCTTGCTAAAGAAAACATTAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGTTCTCTCAACTTGATGTCCTGTTACTTGAAGACAGGGCAGTATAATGAATGCATAAAAGAAGGTTCTGAGGTTCTGGCATATGAGGCGAAGAACCTTAAGGCTCTGTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCTATTAAATGATGCTGTTTCTGATCTGACCGAGGCACTTGAAGTGTCCCCTAATGATGATATAATTGCAGAGATTTTAAGGGATACCAAGGAAAAATTGACAATGGAAGGTGGTGAGCAAGCATCTAGAAGAACGGGACTAGTAATTGAAGAAATAACTGAAGAAGTTGAGCATGTGCCATCTGGAAGCTCTTCTTCGAAACAAACAATAGTTCAACCGAAAAAATCTGGTGACTCCTCTAAGAGTAGCAGTACTGCTAACAATGGAAATCCAAAATCAAATGTAGACAGTTTCGAAGCATTGAGAAAAGATCCTGAAGCTGTCAGGTCATTCCAGAACTTCATTTCAAACACCAATCCTGCCACGCTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTATCCCCAGATATGATCAAAACTACTTCTGATATGATTAGTAAGATGTCGCCCGATGAACTGCAAAAAATGCTTGACATGGCTTCTTCATTTCAAGGGGACAATCCATATTTCAGAGGAGGTCCCCCTGATTCTTCTTTCAACCCAGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCTGATGAGCTTAAGAAGATGTTTGAAATGGCATCCTCACTGAAAGGGAAAGAATCTATTCCATCGGCGGCAGCAGTAGATGAGATCAAAAGAAATGTTTCTCAGTCGAACTTCCCATCATCAAGTACTAATGAAACTATTAATTTTGGGGAATCAAGTTCTTCTCATAATGTGTTTCCAAATATGAGAAGTGCTTCTGAGTCAAACTTTTCTTCCTCAAGTACTGATCTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGAAGATGTTCACATCCATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAGGCAGCAAGAGCTCAGGAAGCCGTGTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGGTTCAAAGAGGAGTTGAATCTGCAAGAAAGACAAAGAACTGGTTGCTAGGGAAACCTGGCATGATCTTTGCAATATTCATGCTCATTTTGGCTGTTATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1752 0.4212 MMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQGKFGEALKKYMLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTGQYNECIKEGSEVLAYEAKNLKALYRRGQAYKELGLLNDAVSDLTEALEVSPNDDIIAEILRDTKEKLTMEGGEQASRRTGLVIEEITEEVEHVPSGSSSSKQTIVQPKKSGDSSKSSSTANNGNPKSNVDSFEALRKDPEAVRSFQNFISNTNPATLASLNAGQFKDVSPDMIKTTSDMISKMSPDELQKMLDMASSFQGDNPYFRGGPPDSSFNPGSMPPNVTPDMFKAASDMISKMPADELKKMFEMASSLKGKESIPSAAAVDEIKRNVSQSNFPSSSTNETINFGESSSSHNVFPNMRSASESNFSSSSTDLQEQMRNQMKDPAMRKMFTSMIKNMSPEMMANMGEQFGVKLSPEEAARAQEAVSSMSPESLDKMMLWADRVQRGVESARKTKNWLLGKPGMIFAIFMLILAVILHRLGFIGG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01127 583 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
Spst11g01127 583 Gene3D Tetratricopeptide repeat domain 85 232 IPR011990 GO:0005515
Spst11g01127 583 MobiDBLite consensus disorder prediction 248 285 - -
Spst11g01127 583 SUPERFAMILY TPR-like 92 220 IPR011990 GO:0005515
Spst11g01127 583 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 2 358 - -
Spst11g01127 583 SMART tpr_5 176 209 IPR019734 GO:0005515
Spst11g01127 583 SMART tpr_5 142 175 IPR019734 GO:0005515
Spst11g01127 583 SMART tpr_5 99 132 IPR019734 GO:0005515
Spst11g01127 583 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Spst11g01127 583 MobiDBLite consensus disorder prediction 245 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01127 Spst-Chr11 35595103 35599772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01127 85 209 Calmodulin-binding Proteins AT3G25230 38.168 1.38e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01127 - - gmx:100800315 978.008