Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01098 ATGGAGAGACCAGTGTCGTGGCGATCTACTCTTGCCACCAGGCAGCGGCTCAAACGTCGTTTCTCCACCACCACAGACAAGACGCGAACAACCACCACAACGCGTCCTCTTGGAAGCATGGTTATGGGGAGAACACTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCCTCGGAAGCGGTGGGGAGGAAAGAACCTTCTTCACCTACCAGTGTGAATTCCACTGTTTCTTCAAGACCGAAGGTTGTGAAATTGGGAGTCCTCTTCACTGTGGATTCTGTCATTGGAAGATCAGTTTTACCTGCAATTATGGCCGCTGTTAATGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGGCCTGCAAGTTATTTTGCACAATACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTAGTTGGTCCACTTTCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCAACTGACCCCACTCTATCTGCTCTACAATACCCATATTTTATCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAGTTGCAGCCTTTGTTGATTATTGCAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGAAGAAATGGAATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTTCCTCCTGGGGCCTCAGAAAGTGATATTAGCGACTTGCTAAATGAATTGAACTTAATGGAATCGCGGGTTTATGTTCTGCATGTGAATCCTGATACTGGTTTAGAAATTTTCTCTATTGCCAAGAAGCTAAGAATGATGGACAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTTGAGTCACCTGATCCTGGCACAATGGATCTCTTACAAGGGATTGTAGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAGGAGTCTTCTCTCCAGGTTGAAAAGCCAGAGAGTCAAAGAGACTGTAAGCTTCAATTCTTATGCATTTTATGCATACGATTCTGTTTGGTTAGCAGCTCGTGCCCTTGATGCTTATCTTAATGAAGGTGGAAATATATCTTTCTCCAGTGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCAGTTAGCATCACTTCGTACCTTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTGGAAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGATACGGACAAGAATTTAGTTCATCCAGCTTATGAAATTCTCAATATTGGTGGTAGTGGATCCCATAGAATTGGCTATTGGTCCAATCATTCTGGTCTGTCGGTTATAGCTCCTGAAACTTTATATCTGAAAAAATCGTCTAACACATCTTCGCTGAGAAATCAACAACTGTACAGTGTGTTATGGCCTGGACAGGTTACAACGACACCAAGGGGGTGGGTGTTTCCCAACAATGGACAGCCACTAAGGATAGCAGTTCCAAACCGAGTGAGCTACAAAGACTTTGTTTCTAAGGACAAGGACCCGCCAGGGGTACAAGGCTATTGCATTGATGTCTTTGAAGCAGCCTTAAAATTGTTACCTTACCCTGTTCCACGAAAATACATGTTATTCGGAAATGGTGAAAGGAATCCTAGTTACGACGAGCTTGTGGAACACGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTGTGGAGCAAAAGTCAAGCCCTTGGTCTTTCCTTGAGCCATTCACTACTCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTCGGAACTGTTGTGTGGATTCTTGAGCACCGGCTCAATCCTGAATTCCGGGGTTCACCGAGGAAACAACTCATAACAGTGTTCTGGTTTAGTTTCTCAACAATGTTTTTCTCTCATAGGGAGAACACCGTGAGTGGACTTGGGCGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCTAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTGAACCGATTGGAATTCAAGATGGTTCATTTGCACGGAAATATCTTGTAGATGACCTCAATATAGCAGAATCTAGAATAGTTACTTTGAAAACCATGGAGGATTATATTGATGCCCTTCAGAGAGGCCCTAAAGCTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATATTGAGCTCTTGATGTCCAGCAGTCACTGTAAGTTCAGAACTGTTGGCCGGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACTGCCATTCTTCAACTCTCTGAGAGTGGGGACCTGCAAAGGATTCATGACGAATGGCTTAATAAAAAGGACTGTACTAGCGTTGCTGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTGTCATTGCCCTGATTATTTTCTTTGCTAGAATCTTCTGTCAGTATAACAAGTTCAGCCCAGAGTCTGAGAACACTGCTGAGGAAATTCAACCAGTTAGGAGGTCTAGACGTCCAAGCAGAACTCCCAGCCTTAAGAAGTTGATGGTGTTTGTAGATAAAAGGGAAGCAGAGATCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCCAAAGCTTGGAGGATCGTTCTGTTTCATCATCCATGTAG 2925 0.4342 MERPVSWRSTLATRQRLKRRFSTTTDKTRTTTTTRPLGSMVMGRTLFLLVLCLWIPSEAVGRKEPSSPTSVNSTVSSRPKVVKLGVLFTVDSVIGRSVLPAIMAAVNDVNSSTSILPGIGLQVILHNTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQNDYFQMYAVAAFVDYCRWREVIAIYVDDDNGRNGISVLGDALSKKRAKISYKAAFPPGASESDISDLLNELNLMESRVYVLHVNPDTGLEIFSIAKKLRMMDSGYVWIATDWLPSVLDSFESPDPGTMDLLQGIVAFRHHIPDTDLKRSLLSRLKSQRVKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQDTNGSMLQLASLRTFDGGPQFLQTILEMNFTGVSGQIEFDTDKNLVHPAYEILNIGGSGSHRIGYWSNHSGLSVIAPETLYLKKSSNTSSLRNQQLYSVLWPGQVTTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKDPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGERNPSYDELVEHVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFVEQKSSPWSFLEPFTTQMWCVTGAFFLFVGTVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTEPIGIQDGSFARKYLVDDLNIAESRIVTLKTMEDYIDALQRGPKAGGVVAVVDELPYIELLMSSSHCKFRTVGREFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDEWLNKKDCTSVAVDSNKLALTSFWGLFLICGIACVIALIIFFARIFCQYNKFSPESENTAEEIQPVRRSRRPSRTPSLKKLMVFVDKREAEIKEILRENKKRRHSQSLEDRSVSSSM 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01098 974 CDD PBP1_GABAb_receptor_plant 83 472 IPR044440 -
Spst11g01098 974 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 82 921 IPR015683 -
Spst11g01098 974 Gene3D - 514 628 - -
Spst11g01098 974 FunFam Glutamate receptor 514 630 - -
Spst11g01098 974 Gene3D - 629 750 - -
Spst11g01098 974 FunFam Glutamate receptor 630 760 - -
Spst11g01098 974 FunFam Glutamate receptor 756 864 - -
Spst11g01098 974 SUPERFAMILY Periplasmic binding protein-like I 77 511 IPR028082 -
Spst11g01098 974 CDD GluR_Plant 517 860 - -
Spst11g01098 974 SMART GluR_14 520 862 IPR001320 GO:0015276|GO:0016020
Spst11g01098 974 Pfam Receptor family ligand binding region 98 454 IPR001828 -
Spst11g01098 974 Gene3D - 101 445 - -
Spst11g01098 974 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 95 111 - -
Spst11g01098 974 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 155 183 - -
Spst11g01098 974 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 368 380 - -
Spst11g01098 974 Pfam Ligand-gated ion channel 862 891 IPR001320 GO:0015276|GO:0016020
Spst11g01098 974 PIRSF IGluLR_plant 39 974 IPR017103 -
Spst11g01098 974 Gene3D - 197 470 - -
Spst11g01098 974 Gene3D - 752 864 - -
Spst11g01098 974 FunFam Glutamate receptor 197 362 - -
Spst11g01098 974 SUPERFAMILY Periplasmic binding protein-like II 494 862 - -
Spst11g01098 974 Pfam Bacterial extracellular solute-binding proteins, family 3 529 861 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01098 Spst-Chr11 35310973 35319692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01098 78 827 Ion Channels AT1G05200 68.133 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01098 K05387 - gmx:100802782 1620.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01098 11 35310973 35319692 Spst11g01098 11 35310973 35319692 ECH
Spst5g00746 5 6516857 6520142 Spst11g01098 11 35310973 35319692 PCT
Spst11g01098 11 35310973 35319692 Spst5g00744 5 6505140 6510387 PCT