Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01085 ATGGCTGACATAGATCGCTCCTCTGATAAATCGTGTGTTGATTCTAAAGAGAAATCCCTCCAAACTTCGAATGTTGAATTTTCTGAGGCTGAGGAAATCCTTATTGCCATGGTGTATAATCTGGTTGGGGAAAGGTGGTCTTTGATTGCTGGAAGAATTCCAGGAAGAACTGCAGAAGAGATAGAGAAGTACTGGACTTCAAGATACTCGACTAGCCAATGA 222 0.4189 MADIDRSSDKSCVDSKEKSLQTSNVEFSEAEEILIAMVYNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSTSQ 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01085 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 25 70 - -
Spst11g01085 73 SUPERFAMILY Homeodomain-like 26 69 IPR009057 -
Spst11g01085 73 CDD SANT 26 65 IPR001005 -
Spst11g01085 73 SMART sant 23 71 IPR001005 -
Spst11g01085 73 MobiDBLite consensus disorder prediction 1 16 - -
Spst11g01085 73 FunFam MYB-like transcription factor 26 68 - -
Spst11g01085 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
Spst11g01085 73 Gene3D - 26 68 - -
Spst11g01085 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 73 IPR017930 -
Spst11g01085 73 ProSiteProfiles Myb-like domain profile. 27 69 IPR001005 -
Spst11g01085 73 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01085 Spst-Chr11 35147633 35148418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01085 27 70 MYB Transcription Factor Family AT5G14750 50.000 2.35e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst11g01085 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01085 - - var:108340066 134.806