Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01078 ATGGTAAGGGCTCCTTATTTTGATAAAAATGGAACAAAGAAAGGAGCATGGAGTGAGGAAGAGGATAAGAAGCTTATTGCTTATGTTGAGAAACATGGCCATCCCAATTGGCGTCAACTTCCAAAGTTTGCAGGGTTGCAAAGATGTGGAAAAAGCTGCAGACTTCGATGGATGAATTACCTGCGACCAAATCTAAAACGAGGGAACTATACCCCCAAAGAAGAGCAAATCATCACGGATTTGCATAAAAAACATGGCAATAAATGGTCTTTGATTGCTGAAAATCTACCTGGAAGAACAGACAATGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTCCTGAAGAGCAACATGAACAACTCTTGTGATGAAGATTTGACGTCCAGTGGATGCAAAGAGTTTGAAAGTCCAGTAAACGAGGCTCTTAGTGTTGAATGTCACCACATTTTGGAGAGTTCAGTGTCAATTTCCTCAGAAACATCCTACACCGATCACAATTCCCCTTCACTTTCATTCTCCTCTAGTCACACCGAATCAAACTTGAACATGTGCAAGGAAGAAGCAAGTGTTGCTTCGTTGGAAACATTGGATTTAGGGTTCAGTAGCAATTTCTGGACCGAACCGTTCATTTCAGAAAATGCACTTAGTCAGGATTATTTTCCCATTTCCTCTTACGGAACAGAACCGTTTTACTTGTGGTAG 708 0.4096 MVRAPYFDKNGTKKGAWSEEEDKKLIAYVEKHGHPNWRQLPKFAGLQRCGKSCRLRWMNYLRPNLKRGNYTPKEEQIITDLHKKHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFLKSNMNNSCDEDLTSSGCKEFESPVNEALSVECHHILESSVSISSETSYTDHNSPSLSFSSSHTESNLNMCKEEASVASLETLDLGFSSNFWTEPFISENALSQDYFPISSYGTEPFYLW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01078 235 CDD SANT 69 112 IPR001005 -
Spst11g01078 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst11g01078 235 SMART sant 13 63 IPR001005 -
Spst11g01078 235 SMART sant 66 114 IPR001005 -
Spst11g01078 235 FunFam MYB-related transcription factor 13 66 - -
Spst11g01078 235 CDD SANT 16 61 IPR001005 -
Spst11g01078 235 Gene3D - 13 66 - -
Spst11g01078 235 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst11g01078 235 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst11g01078 235 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst11g01078 235 Gene3D - 69 135 - -
Spst11g01078 235 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst11g01078 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 187 - -
Spst11g01078 235 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Spst11g01078 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01078 Spst-Chr11 35028193 35029331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01078 1 174 MYB Transcription Factor Family AT2G31180 51.149 1.26e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g01078 Myb_DNA-binding 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01078 K09422 - gmx:100781032 389.423