Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01077 ATGGTGAGAGCTCCTTTCTATGATAAAAATGGAGTGAAGAAAGGTGCATGGAGTAGAGAAGAAGATGATAAGTTAAAAACTTATGTTCAGATATATGGTCACTCTAACTGGCGTCAACTTCCCAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTGAGACCAAATCTAAAACACGGGAACTACACCCCAGAGGAAGAGGAAATAATCATCAAATTCCACCAACAATTTGGAAATAAATGGTCCATGATTGCTGAAAAACTCCCTGGAAGAACCGACAATGAGGTAAAGAACTATTGGCATAGTCACCTGAAAAAGAGGTTAAAGAGCAAAGAAATCACAACGTCTAAGTTGAAGACCAAGCCAGGTGATAGTTTGGAAGAAAATTTAAATGAGACTAATGAATTTGAAAATTGTGAAAACCTAGGTGCCAATAGTGGTGAAAACTTCCTTCATATTTTAGAAAGTTCGTCGGCCATGTCCTCGGAAACATCAGAAGGAGGCAACTATTCCTTTACCACTAATGCTGAACATGGTGTTCTTCCATTTTCATACAAAGAATTCAGCGGCGATTTTTGGTCTGAGCCATTCCTTGTAGAAGATATAGATACGCATCAAGATGAGATTTGCAGTGATGAAGGCATGATATTGTTAATTTCAAACTTCGATGGTGCATATTTGCTGTAG 711 0.3854 MVRAPFYDKNGVKKGAWSREEDDKLKTYVQIYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTPEEEEIIIKFHQQFGNKWSMIAEKLPGRTDNEVKNYWHSHLKKRLKSKEITTSKLKTKPGDSLEENLNETNEFENCENLGANSGENFLHILESSSAMSSETSEGGNYSFTTNAEHGVLPFSYKEFSGDFWSEPFLVEDIDTHQDEICSDEGMILLISNFDGAYLL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01077 236 FunFam Transcription factor RAX3 7 67 - -
Spst11g01077 236 CDD SANT 69 112 IPR001005 -
Spst11g01077 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst11g01077 236 CDD SANT 16 61 IPR001005 -
Spst11g01077 236 Gene3D - 68 138 - -
Spst11g01077 236 FunFam Transcription factor MYB14 isoform A 69 139 - -
Spst11g01077 236 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst11g01077 236 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst11g01077 236 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Spst11g01077 236 Gene3D - 7 67 - -
Spst11g01077 236 SMART sant 66 114 IPR001005 -
Spst11g01077 236 SMART sant 13 63 IPR001005 -
Spst11g01077 236 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst11g01077 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst11g01077 236 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst11g01077 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01077 Spst-Chr11 35007189 35008436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01077 1 224 MYB Transcription Factor Family AT2G31180 40.789 5.35e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g01077 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01077 K09422 - gmx:100776043 248.825