Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01075 ATGGTGAGAACCCCGTCTTGTGACAAAAATGGACTGAGGAAGGGTACTTGGACTCCGGAGGAAGATATGAAGTTAGTTGCTTATGTCACTAGGTATGGATGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTGAGGCCTAACCTCAAAAGGGGAAACTTCACTCCACAAGAAGAAGAATGTATCATCAGAATGCACAAGAATCTTGGCAACAGATGGTCTGCTATTGCGGCTGAGTTACCCGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACTCTCAAGAAAAGGTCTGAACAAAACACACATACAAGTGAAGAAGTTAGAGCCTCCAAATCAAAGAATAAAGAATCCAGGCAAGGGAGGAACTCGGTTCCCAACAAAAATGGTGTTACTGTTACTCTTCCAGCTACTTCCCAGATTTCAGACAATTCATCAGGCTCATTCTCGCCAGTTTCATCCGCCAGCAGCGAGTTTTCCTCCATAACTTCAGATCATTCCAGTGCTGCTAGTATGGAAAATTTGGTGTTTGAAGAACATGACTTGGGTTTTCTGGATTCATACGTGAATGAAACTTTCTGGAAAGAACTAAACCTGCTGGATGGAGTTTCCTACGGTGCACCAAGTGAAGTAGTGTCAGGAGATACCAATGGCAGTTTTGAAAGTACAAGTTGTAGCCAGATGGCTGATTCTTGTGCATTATCTCCGCATGAATCATCATCCAGTGAAAGCATGGTAGTGGACAATGACTTGGGCAGCTTTCTGGATGCATATGGAGAGGCAACAGTTGATAACTTTTGGTCGCAACCATATGTGGCTGACGTGTCCCATGTTCCAAGCGACCTACTTGTTCCCTCCGTCGCAGAATCTGAATATTTATATGATGATTTGTGGGGTCAAAGTCATTATGTACAATGA 972 0.4352 MVRTPSCDKNGLRKGTWTPEEDMKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTPQEEECIIRMHKNLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSEQNTHTSEEVRASKSKNKESRQGRNSVPNKNGVTVTLPATSQISDNSSGSFSPVSSASSEFSSITSDHSSAASMENLVFEEHDLGFLDSYVNETFWKELNLLDGVSYGAPSEVVSGDTNGSFESTSCSQMADSCALSPHESSSSESMVVDNDLGSFLDAYGEATVDNFWSQPYVADVSHVPSDLLVPSVAESEYLYDDLWGQSHYVQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01075 323 FunFam MYB-related transcription factor 13 66 - -
Spst11g01075 323 MobiDBLite consensus disorder prediction 110 139 - -
Spst11g01075 323 MobiDBLite consensus disorder prediction 140 175 - -
Spst11g01075 323 CDD SANT 69 112 IPR001005 -
Spst11g01075 323 CDD SANT 16 61 IPR001005 -
Spst11g01075 323 Gene3D - 68 143 - -
Spst11g01075 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 238 - -
Spst11g01075 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst11g01075 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst11g01075 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst11g01075 323 FunFam Transcription factor MYB14 69 143 - -
Spst11g01075 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst11g01075 323 SMART sant 13 63 IPR001005 -
Spst11g01075 323 SMART sant 66 114 IPR001005 -
Spst11g01075 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst11g01075 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst11g01075 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst11g01075 323 MobiDBLite consensus disorder prediction 110 175 - -
Spst11g01075 323 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01075 Spst-Chr11 34995333 34996513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01075 1 143 MYB Transcription Factor Family AT2G31180 60.140 1.92e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g01075 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01075 K09422 - gmx:100777107 447.973