Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01073 ATGATGGTGAGAACCCCGGGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTCGATTATATTACCAGGTATGGCCACTGGAATTGGCGCCTACTCCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTGAATTACCTAAGGCCAAACCTCAAAAGAGGAAACTACACCGAAGAAGAAGAGGAAACTATCATCAAGCTGCACCGACATCTGGGTAACAGATGGTCTGCTATTGCTGCACGGATTCCAGGAAGAACAGACAATGAAATAAAAAACTATTGGCACACCAACCTCAAGAAACGGTCTCAACAGGACTCAGCCACAGAATCTCAGGTCTCAAATTCAAGTGAACAATGCCCAACAACAACTGAACCAAGTGCTAATACTTTCCAAAGCTTTAACTCCACTCAAGATTGTTCCCCATTTTCCCAGCATTCATCATCCTCCACAACAAGCACAGAATGTACCACTGTAACCAGAAACGAAAATCTGGTTCTGCAAGATGATTTTTCCTTTTGGGATACTGACACGGATCTTGTGAGTGGGAATTTCTGGTTAGAATCATATTTGTTTGATATTTCATATGAAACTAGTGACCCAGAGTACTTTAGCACAGTTTTTGATGCAGAACTTTGGAGCCATGATTATTGCCATCTCGACGTGGAAAATATATACTAA 723 0.4274 MMVRTPGCDKNGLKKGTWTPEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTEEEEETIIKLHRHLGNRWSAIAARIPGRTDNEIKNYWHTNLKKRSQQDSATESQVSNSSEQCPTTTEPSANTFQSFNSTQDCSPFSQHSSSSTTSTECTTVTRNENLVLQDDFSFWDTDTDLVSGNFWLESYLFDISYETSDPEYFSTVFDAELWSHDYCHLDVENIY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01073 240 MobiDBLite consensus disorder prediction 115 142 - -
Spst11g01073 240 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Spst11g01073 240 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Spst11g01073 240 FunFam MYB-related transcription factor 14 67 - -
Spst11g01073 240 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Spst11g01073 240 Gene3D - 69 140 - -
Spst11g01073 240 Gene3D - 14 67 - -
Spst11g01073 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Spst11g01073 240 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst11g01073 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Spst11g01073 240 SMART sant 14 64 IPR001005 -
Spst11g01073 240 SMART sant 67 115 IPR001005 -
Spst11g01073 240 CDD SANT 81 113 IPR001005 -
Spst11g01073 240 FunFam Transcription factor MYB14 70 143 - -
Spst11g01073 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 176 - -
Spst11g01073 240 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Spst11g01073 240 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01073 Spst-Chr11 34975180 34976706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01073 2 207 MYB Transcription Factor Family AT2G31180 48.544 5.54e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst11g01073 Myb_DNA-binding 9.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01073 K09422 - gmx:100778518 374.4