Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01066 ATGAAGAAGTGCGAACTGTGCAAGCTTCCGGGCAGGATTTTCTGCGAGTCGGACCAGGCAAGCTTATGCTGGGACTGCGACGCAAAGGTTCACGGCGCCAACTTCTTGGTCGCAAGACACTCGCGAACCCTCCTCTGCCGTACGTGCCACTCTCCCACGCCGTGGAAGGCCGCCGGGGCCAGACTCGCCAACGCCGCCTCCGTCTGCCACCGCTGCGCCGCCTCCGCCGCGGAAGGACCGGACGAGACCGAATCCCGCAATGACGACGACCCAGACACCGAGGACGGCGATGTTACCGGCGAAGTGGACGGCGACAACCAGGTCGTGCCGTGGTCCTCCACGCCGCCGCCGCCGCCGGCGAGCTCCTCCGGCAGCGAGTGTTCGTCGTTCAGCGAGTGCAGAAACAACGACGACGAAGTTGCTTCCGTTTCCGTATGTGAACCGGAAACGAAAAAATCGTCTTTGAAACGACAACGCGAGGACGACGATGATGATGTTTCCGGTCGTGATCCGCAGGGGCTCAGAAGGGTGGCGCATCTGACCGGAGGTGGCGTGTGA 558 0.629 MKKCELCKLPGRIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCHSPTPWKAAGARLANAASVCHRCAASAAEGPDETESRNDDDPDTEDGDVTGEVDGDNQVVPWSSTPPPPPASSSGSECSSFSECRNNDDEVASVSVCEPETKKSSLKRQREDDDDDVSGRDPQGLRRVAHLTGGGV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01066 185 SMART bboxneu5 1 45 IPR000315 GO:0008270
Spst11g01066 185 CDD Bbox1_BBX-like 3 45 - -
Spst11g01066 185 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 142 - -
Spst11g01066 185 MobiDBLite consensus disorder prediction 78 185 - -
Spst11g01066 185 MobiDBLite consensus disorder prediction 150 172 - -
Spst11g01066 185 MobiDBLite consensus disorder prediction 83 101 - -
Spst11g01066 185 MobiDBLite consensus disorder prediction 123 138 - -
Spst11g01066 185 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Spst11g01066 185 Pfam B-box zinc finger 2 40 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01066 Spst-Chr11 34903265 34903903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01066 2 79 C2C2-CO-like Transcription Factor Family AT4G27310 64.103 1.25e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst11g01066 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01066 - - vun:114168631 280.026