Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01044 ATGTGCAAAGGTATAGAAGAAAAAAAGCATGCTGGTTCATGCAGGAGCTTGCCACCTGCAGAGAAGTCTTCGTTTGCTGTTACAAGAGGTTGTTCGACATCCTGTGAACTGTGTGGTTTCCAGGCTTCTTTGTATTGTCTAGCAGATGATGCGTATTTGTGCAGAAAATGTGACAAATGGGTTCACAGTGCTAATTTTTTAGCCCTGAGACATGTAAGGTGTTTTTTATGCAACACATGTCAGAACCTTACTCAGAGATATCTGATTGGAGTCTCAGCAGAGATCGTTCTTCCAGCAAGATGGATTGAGCAGAAACAGAACCTTCCTAACATCCATGAATATCGTTCAAGAACGATAAACAAACCTTTAAACTTTCTCTAG 381 0.4094 MCKGIEEKKHAGSCRSLPPAEKSSFAVTRGCSTSCELCGFQASLYCLADDAYLCRKCDKWVHSANFLALRHVRCFLCNTCQNLTQRYLIGVSAEIVLPARWIEQKQNLPNIHEYRSRTINKPLNFL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01044 126 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 34 84 - -
Spst11g01044 126 CDD Bbox1_BBX-like 35 76 - -
Spst11g01044 126 SMART bboxneu5 30 76 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01044 Spst-Chr11 34632018 34632398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01044 1 126 C2C2-CO-like Transcription Factor Family AT3G21890 41.985 6.36e-25 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst11g01044 zf-B_box 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01044 - - qsa:O6P43_028701 147.517