Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01043 ATGGTTGAAGGAAAGCAGTTCAAGACCAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCCTTCGCCCATGGGAATGCGGAGCTTCGACGATTCCCTGCCTCATATAGTGGGAGGAGAGACTATTTAGGTAATGACTTGAGGGATAAACTTGACAGAAGGCATTTATCTCCTCGAAGATACTCACCAGCCCAAGATGCAAGAGGCCGCCAGAGCATCCGTGAATACAGTCCTTCGAGATCTTTGGAGAATAAAAGTGATAGAAGACATAGGAGGAAGCAGGGTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGTCTCAGATAGAGTTCAAGATCAAGTTAAAGAAAGAAAAATGATTTCCTCTGGTTCTAGGAATACTCTTGAGGAGCAGCTGAAGAAAGTAGATTCAAGTATTAGCAATCTACAGAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAACTTGAAGCTCAGTTATGCAAAGAGGATGAGGAGTGCAAACGAATTACTTCAAGAATAAGGAAATTTGTTAGAGTGCACAATCACACGTCACAGTTACAAGATGAACTGAAGAGATCGCAAGTCCGACTTCAGCGATTTGGAGATCAGCTTGTCTCGGACATTTCTAGAATTGGTGCTAATGAAGAAGATTTAAGCATTGATATTATCAGCAATGGTGAAAATACTGGTCTTCTTCCTACTGTCAAACATAATCCGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTGCATCTTGAACGCGATGCTTTGGAAGATATAAAACAAGATAGATCCAAAGATGGCCATTCGGTTGAGACAGCTAGAACTAAGAAGCGTTCTCGGTGGAATATTTCAGATCAATTGCATGACGAGTCACTTGGGGGCCCAGACAATGGAACTGAAGTTATTAGAGCTCTAGATCTTGAAGGGAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTGCCACCAACCAGCATGGCAGCTCATGTGGTTGATGAGGACGTTGATGTTGAACTTTACAACGGAACTGATATCAATGAAACTGCAAATACGGAAAATGAGAATGGAGTTTCATATAAGGTGAAGGTTGCACCGCTTATGCTTCCCCCAGCTTTGATACCTCGTAGCAATTATTCGCAGTACGAGGGTAACGACGAGAATGTTGATGTAGATGGTTGA 1254 0.4226 MVEGKQFKTKLCVLYQRGRCNRHNCSFAHGNAELRRFPASYSGRRDYLGNDLRDKLDRRHLSPRRYSPAQDARGRQSIREYSPSRSLENKSDRRHRRKQGITGQSDTSGNLKVSDRVQDQVKERKMISSGSRNTLEEQLKKVDSSISNLQNRKFQLEVYLDESIQEVDSLNSRIQELEAQLCKEDEECKRITSRIRKFVRVHNHTSQLQDELKRSQVRLQRFGDQLVSDISRIGANEEDLSIDIISNGENTGLLPTVKHNPEHNDASSHRKRLHLERDALEDIKQDRSKDGHSVETARTKKRSRWNISDQLHDESLGGPDNGTEVIRALDLEGRHKRGLKQPRIEVPPTSMAAHVVDEDVDVELYNGTDINETANTENENGVSYKVKVAPLMLPPALIPRSNYSQYEGNDENVDVDG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01043 417 Gene3D - 1 36 - -
Spst11g01043 417 MobiDBLite consensus disorder prediction 85 101 - -
Spst11g01043 417 Coils Coil 160 180 - -
Spst11g01043 417 MobiDBLite consensus disorder prediction 281 309 - -
Spst11g01043 417 Coils Coil 132 152 - -
Spst11g01043 417 MobiDBLite consensus disorder prediction 54 118 - -
Spst11g01043 417 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Spst11g01043 417 MobiDBLite consensus disorder prediction 281 322 - -
Spst11g01043 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 416 IPR045868 GO:0046872
Spst11g01043 417 MobiDBLite consensus disorder prediction 253 272 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst11g01043 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01043 - - gmx:100811131 723.776