Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01039 ATGCGTTGGTCTTCCAGCTTCTTTCACACAGCCTCAAGGGTTTTCAACGAGTATCCATCATGGTCCAAGGCTGTTCTTGTTTGCACTGTCATCAGTGGTGGAGGAGCAATGGCATATTGCGATGCAAAACCAGAAATCAGTAATGAACGTCCAAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCGGGAACCAGTTTTCTGAAAAACATGAAAAGCAATTCGTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCATTCACTCCATTGCTACCAAGTGTCACATGTGGCTCAGTGGAAGCAAGGAGCGTCGTTGAACCCATTCGCAGTATCACCCGCAAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTACAAGATTGATCACAAGAACAACAAAGTTTTTTGTCGTGCTGGTAAAGTCAAAAAGTCTGATGACCAAGAAGAATTTTCCATTGACTATGATTACTTGGTAATTGCTATGGGAGGTCGTTCTAATACCTTCAACACACCTGGTGTTGAGGAACATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATCCGTCAGAAAGTGATTGAACTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCTGTGGAAGAGAAGAAAAGACTTCTGAGTTTTGTAGTTGTTGGTGGTGGTCCAACCGGGGTAGAATTTTCTGCTGAGCTTCATGACTTTGTACATGAGGATATGGCTCATTTATATCCTGCCCTCAAAGACTACGTGAAGATTACTCTCTTGGAAGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAACAAAAGTTCGCCAGAGATGGCATTAATGTGAAGTTGGGATCTATGGTTGTGAAAGTTGGTGAAAACGAAATCACTGCCAAAGAAAGGTCAACTGGTCAAGTTGTTTCTATACCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAATAGTTGAATTTATGAAGCAACTTGGCCAGGTTAACAGACGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTTGGTGATTGTGCCACGATAAATCAACGTAAAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGATAAGAACAACTCTGGAAAGTTAGATCTTAAAGAATTTAAACACGTTGTTGGGGACATTATTGAAAGGTACCCTCAAGTGGAAATTTATTTAAAGAAGAACCAAATGAGAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAAATCGCCATTTCAGTGGACATTGAATACTTCAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCCACAGCTCAGGTAGCTGCACAGCAAGGAGTGTATCTTGCAGACTGTTTCAACCGCATGGAGATGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTCAGAGGAGTTGGTCGCCATCGATTCCGTCCCTTCAGATACAAGCATTTGGGACAATTTGCTCCTCTAGGAGGGGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCAGTGTATACAAGCAAACAAGTAAGCTGGAGGACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGGCGATTCATATTTGGTAGGGATTCAAGTCAAATATAA 1722 0.4268 MRWSSSFFHTASRVFNEYPSWSKAVLVCTVISGGGAMAYCDAKPEISNERPKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGSVEARSVVEPIRSITRKSGVNIHFSEAECYKIDHKNNKVFCRAGKVKKSDDQEEFSIDYDYLVIAMGGRSNTFNTPGVEEHAHFLKEVDEALKIRQKVIELFERASLPSLPVEEKKRLLSFVVVGGGPTGVEFSAELHDFVHEDMAHLYPALKDYVKITLLEAGDHILNMFDKRITEFAEQKFARDGINVKLGSMVVKVGENEITAKERSTGQVVSIPHGMVVWSTGIGARPEIVEFMKQLGQVNRRALVTDEWLRVEGSDNIYALGDCATINQRKVMEDIAVIFSKADKNNSGKLDLKEFKHVVGDIIERYPQVEIYLKKNQMRDMASLLKKSQEIAISVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMEMCERYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFIFGRDSSQI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01039 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 377 IPR023753 GO:0016491
Spst11g01039 573 SUPERFAMILY FAD/NAD(P)-binding domain 212 372 IPR036188 -
Spst11g01039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Spst11g01039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Spst11g01039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 369 - -
Spst11g01039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Spst11g01039 573 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Spst11g01039 573 PANTHER NADH DEHYDROGENASE 47 573 IPR045024 GO:0003954|GO:0006116
Spst11g01039 573 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Spst11g01039 573 SMART efh_1 379 407 IPR002048 GO:0005509
Spst11g01039 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 404 - -
Spst11g01039 573 Gene3D - 45 404 - -
Spst11g01039 573 Gene3D - 439 572 - -
Spst11g01039 573 SUPERFAMILY EF-hand 369 455 IPR011992 -
Spst11g01039 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01039 Spst-Chr11 34582960 34587089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01039 6 573 Chloroplast and Mitochondria Gene Families AT4G21490 67.301 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01039 K03885 - gmx:100820044 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01039 11 34582960 34587089 Spst11g01039 11 34582960 34587089 ECH