Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01005 ATGGCGAATAACGGTGGAAAGTCAAGCAAGGAGGGTGTTGAAGAGACCCATCATGACAAAGTGTTTGGTGAATGTGAAGGCCAAGATTGGGATAAAGAGAAGGGAAAGGCTGTGGATTTGAGCTCAGGGAGGAGACAGTGGAAGCCAGTTTTTGATGATGCTTTCTCACAAAGGCCTCTCAAGAAATTCCGCAGCCCTGAACGCGAAAACCCCAATCAACAACCTTCATCATCATCATCATCATCATCGTCCTCTATGCCATCTCGCCAACCTCCTTCGTCAAGAATAGTGTTTCCTTTCGCTTTTGAAGGCTCTCAACACCCAATGCCATCAATCCCACACTCCTTTGGAGCCACAAACTTGCCACTTTTTCGTCCACCTCTTCAGCAACCGCAACAAATGATATCTTTTGGACCCCAACAGAATATGGGGTTTCCACCATTCCTAAGCCCAGATTCCACCACACCAAACCAACAACAATATCATCATCAGTATCAACAGCAGCAGCAGCTTCTGCAGTATTGGAATGATGCACTGAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCGGGGCATGAAGGGAGACCAACATTAAGGCCTCAAGCACAGCCTTTGAATGCCACCAAGCTCTACAGGGGAGTGAGGCAACGTCATTGGGGGAAATGGGTCGCGGAAATTCGTCTCCCTCGCAATAGAACTCGCCTATGGCTTGGCACCTTCGACACTGCTGAAGATGCTGCTATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTTCCCGAACTCTTCCTTAACAAAGATAAAGTAGAACCATCCATATCTGCTCCTGCTTCTTCTTCCAACGACGGTTCAACATCAACATCTAGCCAGAACACAAAACTACCTGAGCCAGTTCCAGAAGAGACCAAGACTGAGAGTGAGGACATGCCACCGACTGAGACATTAGCAGAAGAGAATGCTGAAACCGAGGAAGGAGTTTCACAGCCTCAGGAATTGGTTTGGGGAGAGTGGTTCAATGCAATTCCTGCAGGTTGGGGTCCTGGGAGTCCTGTGTGGGATGATTTGTACCCCAACAATAATCTTCTTTTGCATTCACAACTTCCCTTTGTGAATCCAAATCATCAAGAGTTTCATCATGATGCTGGTGCTTCTTCTCAGACACAACAAGATAACAACAACACAGGACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA 1266 0.4708 MANNGGKSSKEGVEETHHDKVFGECEGQDWDKEKGKAVDLSSGRRQWKPVFDDAFSQRPLKKFRSPERENPNQQPSSSSSSSSSSMPSRQPPSSRIVFPFAFEGSQHPMPSIPHSFGATNLPLFRPPLQQPQQMISFGPQQNMGFPPFLSPDSTTPNQQQYHHQYQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPTLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKVEPSISAPASSSNDGSTSTSSQNTKLPEPVPEETKTESEDMPPTETLAEENAETEEGVSQPQELVWGEWFNAIPAGWGPGSPVWDDLYPNNNLLLHSQLPFVNPNHQEFHHDAGASSQTQQDNNNTGPGSSSPSCPMRPFF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01005 421 CDD AP2 214 274 IPR001471 GO:0003700|GO:0006355
Spst11g01005 421 MobiDBLite consensus disorder prediction 284 309 - -
Spst11g01005 421 MobiDBLite consensus disorder prediction 384 413 - -
Spst11g01005 421 Gene3D AP2/ERF domain 215 273 IPR036955 GO:0003700|GO:0006355
Spst11g01005 421 SUPERFAMILY DNA-binding domain 215 273 IPR016177 GO:0003677
Spst11g01005 421 MobiDBLite consensus disorder prediction 69 92 - -
Spst11g01005 421 SMART rav1_2 215 278 IPR001471 GO:0003700|GO:0006355
Spst11g01005 421 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 29 367 - -
Spst11g01005 421 MobiDBLite consensus disorder prediction 10 41 - -
Spst11g01005 421 MobiDBLite consensus disorder prediction 1 95 - -
Spst11g01005 421 Pfam AP2 domain 216 264 IPR001471 GO:0003700|GO:0006355
Spst11g01005 421 PRINTS Ethylene responsive element binding protein signature 216 227 IPR001471 GO:0003700|GO:0006355
Spst11g01005 421 PRINTS Ethylene responsive element binding protein signature 238 254 IPR001471 GO:0003700|GO:0006355
Spst11g01005 421 MobiDBLite consensus disorder prediction 284 340 - -
Spst11g01005 421 FunFam Ethylene-responsive transcription factor 2 214 273 - -
Spst11g01005 421 ProSiteProfiles AP2/ERF domain profile. 215 272 IPR001471 GO:0003700|GO:0006355
Spst11g01005 421 MobiDBLite consensus disorder prediction 384 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01005 Spst-Chr11 34185877 34187142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01005 142 368 AP2-EREBP Transcription Factor Family AT2G20880 47.876 3.75e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst11g01005 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01005 - - var:108339749 664.455