Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g00990 ATGGCCTTAGATCACTTGGAGGAGACTGTGCCCCAAAAAGAAAAATGGAAATCTTCCAAGGAAGTCATTTCAGATTCTGATATAACTGCCTCTAGTGGCTTTGACTGCAACATCTGCCTTGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACATATGGCTTCATTTTCAAAGTACCACTCTAGACAATGAAGAGCAACAGAAGCCACAATGTCCAGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGCCGTGGCCAAACCACGATACCTTCTAAAGGGAAGCCGCATCAAGTAGGGAATGTCATACCACAAAGGCCTCGTGGTCCCAGATCATTGAACAATAGGAGTGTTTCCCAACCTATTTCTCAAAGTTATCATCATCCCTATAGTAATCCTTATCATACTCAACAATTCAACTCAGTTCCAAGCGGTTATACGTCACCAATGCTTAGAACAAGTGGTTTACTAGACAACTCATCCGGAATCTTTGGTGAATTGATATATACAAGGGTGTTTGGTGACCAAGTGACAAACATGCATACATATGCAAATTCGTACGGTCTTTCAGGGTTAAATAACCCAAGGATGAGAAGACATTTAATGCACGTTGATAAATCACTGAGCAGAATAAGTTGTTTCCTCCTATGCTGCGTAGTTGCGTGTCTCCTCTTATTCTGA 723 0.4177 MALDHLEETVPQKEKWKSSKEVISDSDITASSGFDCNICLECVQDPVVTLCGHLYCWPCIYIWLHFQSTTLDNEEQQKPQCPVCKSEVSQSSLVPLYGRGQTTIPSKGKPHQVGNVIPQRPRGPRSLNNRSVSQPISQSYHHPYSNPYHTQQFNSVPSGYTSPMLRTSGLLDNSSGIFGELIYTRVFGDQVTNMHTYANSYGLSGLNNPRMRRHLMHVDKSLSRISCFLLCCVVACLLLF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g00990 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst11g00990 240 SUPERFAMILY RING/U-box 24 91 - -
Spst11g00990 240 Pfam RING-type zinc-finger 36 82 IPR027370 -
Spst11g00990 240 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Spst11g00990 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 116 IPR013083 -
Spst11g00990 240 MobiDBLite consensus disorder prediction 99 133 - -
Spst11g00990 240 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Spst11g00990 240 SMART ring_2 36 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g00990 Spst-Chr11 34106130 34106852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g00990 21 240 C3H Transcription Factor Family AT4G28270 37.555 2.12e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g00990 K10666 - gmx:100786373 394.43